Gene : Medtr8g011890 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR21297 - DNA-DIRECTED RNA POLYMERASE II Description:  RNA polymerase II, Rpb4, core protein
Genomic Order:  472 Name:  ? Medtr8g011890
Secondary Identifier:  ? PAC:31072521
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g011890 0.5kb upstream 0.5kb upstream 4343   true chr8: 3252975-3257317 Medicago truncatula
Medtr8g011890 0.5kb upstream 0.5kb upstream 500   false chr8: 3252975-3253474 Medicago truncatula
Medtr8g011890 0.5kb downstream 0.5kb downstream 4343   true chr8: 3253475-3257817 Medicago truncatula
Medtr8g011890 0.5kb downstream 0.5kb downstream 500   false chr8: 3257318-3257817 Medicago truncatula
Medtr8g011890 1.0kb upstream 1.0kb upstream 4843   true chr8: 3252475-3257317 Medicago truncatula
Medtr8g011890 1.0kb upstream 1.0kb upstream 1000   false chr8: 3252475-3253474 Medicago truncatula
Medtr8g011890 1.0kb downstream 1.0kb downstream 4843   true chr8: 3253475-3258317 Medicago truncatula
Medtr8g011890 1.0kb downstream 1.0kb downstream 1000   false chr8: 3257318-3258317 Medicago truncatula
Medtr8g011890 2.0kb upstream 2.0kb upstream 5843   true chr8: 3251475-3257317 Medicago truncatula
Medtr8g011890 2.0kb upstream 2.0kb upstream 2000   false chr8: 3251475-3253474 Medicago truncatula
Medtr8g011890 2.0kb downstream 2.0kb downstream 5843   true chr8: 3253475-3259317 Medicago truncatula
Medtr8g011890 2.0kb downstream 2.0kb downstream 2000   false chr8: 3257318-3259317 Medicago truncatula
Medtr8g011890 5.0kb upstream 5.0kb upstream 8843   true chr8: 3248475-3257317 Medicago truncatula
Medtr8g011890 5.0kb upstream 5.0kb upstream 5000   false chr8: 3248475-3253474 Medicago truncatula
Medtr8g011890 5.0kb downstream 5.0kb downstream 8843   true chr8: 3253475-3262317 Medicago truncatula
Medtr8g011890 5.0kb downstream 5.0kb downstream 5000   false chr8: 3257318-3262317 Medicago truncatula
Medtr8g011890 10.0kb upstream 10.0kb upstream 13843   true chr8: 3243475-3257317 Medicago truncatula
Medtr8g011890 10.0kb upstream 10.0kb upstream 10000   false chr8: 3243475-3253474 Medicago truncatula
Medtr8g011890 10.0kb downstream 10.0kb downstream 13843   true chr8: 3253475-3267317 Medicago truncatula
Medtr8g011890 10.0kb downstream 10.0kb downstream 10000   false chr8: 3257318-3267317 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305917 5265 Fabidae View MSA
124060840 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.435       Low
cufflinks 5.373        
cufflinks 6.515       High
cufflinks 3.957       Low
cufflinks 6.503       High
cufflinks 5.738        
cufflinks 6.588       High
cufflinks 5.421        
cufflinks 4.527        

0 Strain