Gene : Medtr1g106055 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Description:  ribosomal RNA small subunit methyltransferase E
Genomic Order:  6022 Name:  ? Medtr1g106055
Secondary Identifier:  ? PAC:31100258
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g106055 0.5kb upstream 0.5kb upstream 4955 true chr1: 47989918-47994872 Medicago truncatula
Medtr1g106055 0.5kb upstream 0.5kb upstream 500 false chr1: 47989918-47990417 Medicago truncatula
Medtr1g106055 0.5kb downstream 0.5kb downstream 4955 true chr1: 47990418-47995372 Medicago truncatula
Medtr1g106055 0.5kb downstream 0.5kb downstream 500 false chr1: 47994873-47995372 Medicago truncatula
Medtr1g106055 1.0kb upstream 1.0kb upstream 5455 true chr1: 47989418-47994872 Medicago truncatula
Medtr1g106055 1.0kb upstream 1.0kb upstream 1000 false chr1: 47989418-47990417 Medicago truncatula
Medtr1g106055 1.0kb downstream 1.0kb downstream 5455 true chr1: 47990418-47995872 Medicago truncatula
Medtr1g106055 1.0kb downstream 1.0kb downstream 1000 false chr1: 47994873-47995872 Medicago truncatula
Medtr1g106055 2.0kb upstream 2.0kb upstream 6455 true chr1: 47988418-47994872 Medicago truncatula
Medtr1g106055 2.0kb upstream 2.0kb upstream 2000 false chr1: 47988418-47990417 Medicago truncatula
Medtr1g106055 2.0kb downstream 2.0kb downstream 6455 true chr1: 47990418-47996872 Medicago truncatula
Medtr1g106055 2.0kb downstream 2.0kb downstream 2000 false chr1: 47994873-47996872 Medicago truncatula
Medtr1g106055 5.0kb upstream 5.0kb upstream 9455 true chr1: 47985418-47994872 Medicago truncatula
Medtr1g106055 5.0kb upstream 5.0kb upstream 5000 false chr1: 47985418-47990417 Medicago truncatula
Medtr1g106055 5.0kb downstream 5.0kb downstream 9455 true chr1: 47990418-47999872 Medicago truncatula
Medtr1g106055 5.0kb downstream 5.0kb downstream 5000 false chr1: 47994873-47999872 Medicago truncatula
Medtr1g106055 10.0kb upstream 10.0kb upstream 14455 true chr1: 47980418-47994872 Medicago truncatula
Medtr1g106055 10.0kb upstream 10.0kb upstream 10000 false chr1: 47980418-47990417 Medicago truncatula
Medtr1g106055 10.0kb downstream 10.0kb downstream 14455 true chr1: 47990418-48004872 Medicago truncatula
Medtr1g106055 10.0kb downstream 10.0kb downstream 10000 false chr1: 47994873-48004872 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303652 5265 Fabidae View MSA
124070022 5270 Rosid View MSA
123738955 5271 Pentapetalae View MSA
122790203 5272 Eudicot View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.284        
cufflinks 0.415        
cufflinks 0.507       High
cufflinks 0.119       Low
cufflinks 0.568       High
cufflinks 0.121     Low Low
cufflinks 0.16        
cufflinks 0.47        
cufflinks 0.166        

0 Strain