Gene : Glyma.20G135600 G. max Wm82.a2.v1
Defline:  (1 of 2) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Genomic Order:  1356
Name:  ? Glyma.20G135600 Secondary Identifier:  ? PAC:30521052
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G135600 0.5kb upstream 0.5kb upstream 3675 true Chr20: 37511588-37515262 Glycine max
Glyma.20G135600 0.5kb upstream 0.5kb upstream 500 false Chr20: 37514763-37515262 Glycine max
Glyma.20G135600 0.5kb downstream 0.5kb downstream 3675 true Chr20: 37511088-37514762 Glycine max
Glyma.20G135600 0.5kb downstream 0.5kb downstream 500 false Chr20: 37511088-37511587 Glycine max
Glyma.20G135600 1.0kb upstream 1.0kb upstream 4175 true Chr20: 37511588-37515762 Glycine max
Glyma.20G135600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 37514763-37515762 Glycine max
Glyma.20G135600 1.0kb downstream 1.0kb downstream 4175 true Chr20: 37510588-37514762 Glycine max
Glyma.20G135600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 37510588-37511587 Glycine max
Glyma.20G135600 2.0kb upstream 2.0kb upstream 5175 true Chr20: 37511588-37516762 Glycine max
Glyma.20G135600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 37514763-37516762 Glycine max
Glyma.20G135600 2.0kb downstream 2.0kb downstream 5175 true Chr20: 37509588-37514762 Glycine max
Glyma.20G135600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 37509588-37511587 Glycine max
Glyma.20G135600 5.0kb upstream 5.0kb upstream 8175 true Chr20: 37511588-37519762 Glycine max
Glyma.20G135600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 37514763-37519762 Glycine max
Glyma.20G135600 5.0kb downstream 5.0kb downstream 8175 true Chr20: 37506588-37514762 Glycine max
Glyma.20G135600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 37506588-37511587 Glycine max
Glyma.20G135600 10.0kb upstream 10.0kb upstream 13175 true Chr20: 37511588-37524762 Glycine max
Glyma.20G135600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 37514763-37524762 Glycine max
Glyma.20G135600 10.0kb downstream 10.0kb downstream 13175 true Chr20: 37501588-37514762 Glycine max
Glyma.20G135600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 37501588-37511587 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303652 5265 Fabidae View MSA
124070022 5270 Rosid View MSA
123738955 5271 Pentapetalae View MSA
122790203 5272 Eudicot View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.7397 0.0 8.95614    
cufflinks 3.48185 0.0 11.0174   High
cufflinks 1.94778 0.0 6.63887   Low
cufflinks 2.71629 0.0 8.88513    
cufflinks 3.32963 0.0 10.5842    
cufflinks 3.80012 0.0 11.8581   High
cufflinks 2.76135 0.0 9.02839    
cufflinks 2.40525 0.0 7.98868    
cufflinks 2.62095 0.0 8.61781    
cufflinks 1.221        
cufflinks 1.252        
cufflinks 1.337        
cufflinks 1.464        
cufflinks 1.938       High
cufflinks 0.869       Low
cufflinks 1.661        
cufflinks 1.058       Low
cufflinks 1.464        
cufflinks 2.119       High
cufflinks 1.408        
cufflinks 1.077       Low
cufflinks 1.832        
cufflinks 2.638       High
cufflinks 1.269        
cufflinks 1.508        
cufflinks 1.151        

0 Strain