Gene : Glyma.03G088500 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR21297 - DNA-DIRECTED RNA POLYMERASE II Genomic Order:  885
Name:  ? Glyma.03G088500 Secondary Identifier:  ? PAC:30515490
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G088500 0.5kb upstream 0.5kb upstream 4390 true Chr03: 26301604-26305993 Glycine max
Glyma.03G088500 0.5kb upstream 0.5kb upstream 500 false Chr03: 26301604-26302103 Glycine max
Glyma.03G088500 0.5kb downstream 0.5kb downstream 4390 true Chr03: 26302104-26306493 Glycine max
Glyma.03G088500 0.5kb downstream 0.5kb downstream 500 false Chr03: 26305994-26306493 Glycine max
Glyma.03G088500 1.0kb upstream 1.0kb upstream 4890 true Chr03: 26301104-26305993 Glycine max
Glyma.03G088500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 26301104-26302103 Glycine max
Glyma.03G088500 1.0kb downstream 1.0kb downstream 4890 true Chr03: 26302104-26306993 Glycine max
Glyma.03G088500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 26305994-26306993 Glycine max
Glyma.03G088500 2.0kb upstream 2.0kb upstream 5890 true Chr03: 26300104-26305993 Glycine max
Glyma.03G088500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 26300104-26302103 Glycine max
Glyma.03G088500 2.0kb downstream 2.0kb downstream 5890 true Chr03: 26302104-26307993 Glycine max
Glyma.03G088500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 26305994-26307993 Glycine max
Glyma.03G088500 5.0kb upstream 5.0kb upstream 8890 true Chr03: 26297104-26305993 Glycine max
Glyma.03G088500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 26297104-26302103 Glycine max
Glyma.03G088500 5.0kb downstream 5.0kb downstream 8890 true Chr03: 26302104-26310993 Glycine max
Glyma.03G088500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 26305994-26310993 Glycine max
Glyma.03G088500 10.0kb upstream 10.0kb upstream 13890 true Chr03: 26292104-26305993 Glycine max
Glyma.03G088500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 26292104-26302103 Glycine max
Glyma.03G088500 10.0kb downstream 10.0kb downstream 13890 true Chr03: 26302104-26315993 Glycine max
Glyma.03G088500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 26305994-26315993 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305917 5265 Fabidae View MSA
124060840 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.2056 0.0 35.0223   Low
cufflinks 20.7123 0.0 56.4636 High  
cufflinks 11.197 0.0 32.4186   Low
cufflinks 13.5526 0.0 38.4017    
cufflinks 17.4558 0.0 48.3054    
cufflinks 25.1216 0.0 67.7966 High High
cufflinks 25.7005 0.0 69.3741 High High
cufflinks 20.2309 0.0 55.2225    
cufflinks 16.5606 0.0 45.9359    
cufflinks 3.167        
cufflinks 1.507       Low
cufflinks 2.254        
cufflinks 3.431        
cufflinks 4.174       High
cufflinks 1.653       Low
cufflinks 3.539        
cufflinks 1.994        
cufflinks 3.048        
cufflinks 3.057        
cufflinks 2.699        
cufflinks 2.046        
cufflinks 2.886        
cufflinks 3.714       High
cufflinks 1.69       Low
cufflinks 3.445        
cufflinks 2.068        

0 Strain