Gene : Glyma.17G119500 G. max Wm82.a2.v1
Defline:  (1 of 7) KOG0121 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) Genomic Order:  1195
Name:  ? Glyma.17G119500 Secondary Identifier:  ? PAC:30481683
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G119500 0.5kb upstream 0.5kb upstream 4800   true Chr17: 9452226-9457025 Glycine max
Glyma.17G119500 0.5kb upstream 0.5kb upstream 500   false Chr17: 9452226-9452725 Glycine max
Glyma.17G119500 0.5kb downstream 0.5kb downstream 4800   true Chr17: 9452726-9457525 Glycine max
Glyma.17G119500 0.5kb downstream 0.5kb downstream 500   false Chr17: 9457026-9457525 Glycine max
Glyma.17G119500 1.0kb upstream 1.0kb upstream 5300   true Chr17: 9451726-9457025 Glycine max
Glyma.17G119500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 9451726-9452725 Glycine max
Glyma.17G119500 1.0kb downstream 1.0kb downstream 5300   true Chr17: 9452726-9458025 Glycine max
Glyma.17G119500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 9457026-9458025 Glycine max
Glyma.17G119500 2.0kb upstream 2.0kb upstream 6300   true Chr17: 9450726-9457025 Glycine max
Glyma.17G119500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 9450726-9452725 Glycine max
Glyma.17G119500 2.0kb downstream 2.0kb downstream 6300   true Chr17: 9452726-9459025 Glycine max
Glyma.17G119500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 9457026-9459025 Glycine max
Glyma.17G119500 5.0kb upstream 5.0kb upstream 9300   true Chr17: 9447726-9457025 Glycine max
Glyma.17G119500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 9447726-9452725 Glycine max
Glyma.17G119500 5.0kb downstream 5.0kb downstream 9300   true Chr17: 9452726-9462025 Glycine max
Glyma.17G119500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 9457026-9462025 Glycine max
Glyma.17G119500 10.0kb upstream 10.0kb upstream 14300   true Chr17: 9442726-9457025 Glycine max
Glyma.17G119500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 9442726-9452725 Glycine max
Glyma.17G119500 10.0kb downstream 10.0kb downstream 14300   true Chr17: 9452726-9467025 Glycine max
Glyma.17G119500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 9457026-9467025 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041103 5273 Angiosperm View MSA
122306716 5265 Fabidae View MSA
124063155 5270 Rosid View MSA
123740739 5271 Pentapetalae View MSA
122788079 5272 Eudicot View MSA
121345808 5274 Embryophyte View MSA
123427736 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.96955 0.0 17.8341   High
cufflinks 3.31059 0.0 13.4809    
cufflinks 3.29451 0.0 13.078    
cufflinks 4.03079 0.0 18.6684    
cufflinks 2.72119 0.0 9.05753   Low
cufflinks 4.31087 0.0 16.1368    
cufflinks 3.197 0.0 10.0373    
cufflinks 3.78298 0.0 14.7517    
cufflinks 3.44608 0.0 10.6157    
cufflinks 0.954        
cufflinks 0.275       Low
cufflinks 1.15        
cufflinks 1.019        
cufflinks 1.013        
cufflinks 0.496       Low
cufflinks 1.233        
cufflinks 0.616        
cufflinks 1.358        
cufflinks 1.205        
cufflinks 1.241        
cufflinks 0.439       Low
cufflinks 1.414       High
cufflinks 1.284        
cufflinks 0.421       Low
cufflinks 1.22        
cufflinks 0.654        

0 Strain