Gene : Glyma.12G078400 G. max Wm82.a2.v1
Defline:  (1 of 11) PTHR10644 - DNA REPAIR/RNA PROCESSING CPSF FAMILY Genomic Order:  784
Name:  ? Glyma.12G078400 Secondary Identifier:  ? PAC:30548561
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G078400 0.5kb upstream 0.5kb upstream 4408 true Chr12: 6098489-6102896 Glycine max
Glyma.12G078400 0.5kb upstream 0.5kb upstream 500 false Chr12: 6102397-6102896 Glycine max
Glyma.12G078400 0.5kb downstream 0.5kb downstream 4408 true Chr12: 6097989-6102396 Glycine max
Glyma.12G078400 0.5kb downstream 0.5kb downstream 500 false Chr12: 6097989-6098488 Glycine max
Glyma.12G078400 1.0kb upstream 1.0kb upstream 4908 true Chr12: 6098489-6103396 Glycine max
Glyma.12G078400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 6102397-6103396 Glycine max
Glyma.12G078400 1.0kb downstream 1.0kb downstream 4908 true Chr12: 6097489-6102396 Glycine max
Glyma.12G078400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 6097489-6098488 Glycine max
Glyma.12G078400 2.0kb upstream 2.0kb upstream 5908 true Chr12: 6098489-6104396 Glycine max
Glyma.12G078400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 6102397-6104396 Glycine max
Glyma.12G078400 2.0kb downstream 2.0kb downstream 5908 true Chr12: 6096489-6102396 Glycine max
Glyma.12G078400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 6096489-6098488 Glycine max
Glyma.12G078400 5.0kb upstream 5.0kb upstream 8908 true Chr12: 6098489-6107396 Glycine max
Glyma.12G078400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 6102397-6107396 Glycine max
Glyma.12G078400 5.0kb downstream 5.0kb downstream 8908 true Chr12: 6093489-6102396 Glycine max
Glyma.12G078400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 6093489-6098488 Glycine max
Glyma.12G078400 10.0kb upstream 10.0kb upstream 13908 true Chr12: 6098489-6112396 Glycine max
Glyma.12G078400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 6102397-6112396 Glycine max
Glyma.12G078400 10.0kb downstream 10.0kb downstream 13908 true Chr12: 6088489-6102396 Glycine max
Glyma.12G078400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 6088489-6098488 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239776 5265 Fabidae Singleton cluster - no MSA
124039713 5270 Rosid View MSA
123744325 5271 Pentapetalae View MSA
122771021 5272 Eudicot View MSA
122048690 5273 Angiosperm View MSA
121348178 5274 Embryophyte View MSA
123426142 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.23604 0.0 25.3057    
cufflinks 9.36193 0.0 25.6201    
cufflinks 7.89922 0.0 21.8344    
cufflinks 8.70557 0.0 23.9307    
cufflinks 9.3393 0.0 25.5728    
cufflinks 5.9428 0.0 16.9609   Low
cufflinks 15.024 0.0 40.2148   High
cufflinks 7.81136 0.0 21.6922    
cufflinks 8.49829 0.0 23.4269    
cufflinks 3.223        
cufflinks 1.3       Low
cufflinks 3.696        
cufflinks 4.504        
cufflinks 5.389       High
cufflinks 1.961       Low
cufflinks 4.391        
cufflinks 2.266        
cufflinks 4.078        
cufflinks 5.65       High
cufflinks 4.36        
cufflinks 1.674       Low
cufflinks 4.123        
cufflinks 4.556        
cufflinks 1.535       Low
cufflinks 4.094        
cufflinks 2.125        

0 Strain