Gene : Glyma.12G038200 G. max Wm82.a2.v1
Defline:  (1 of 3) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  382
Name:  ? Glyma.12G038200 Secondary Identifier:  ? PAC:30545808
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-2541 Glycine max pathologic  
Gmax PWY-5670 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G038200 0.5kb upstream 0.5kb upstream 6917 true Chr12: 2750945-2757861 Glycine max
Glyma.12G038200 0.5kb upstream 0.5kb upstream 500 false Chr12: 2757362-2757861 Glycine max
Glyma.12G038200 0.5kb downstream 0.5kb downstream 6917 true Chr12: 2750445-2757361 Glycine max
Glyma.12G038200 0.5kb downstream 0.5kb downstream 500 false Chr12: 2750445-2750944 Glycine max
Glyma.12G038200 1.0kb upstream 1.0kb upstream 7417 true Chr12: 2750945-2758361 Glycine max
Glyma.12G038200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 2757362-2758361 Glycine max
Glyma.12G038200 1.0kb downstream 1.0kb downstream 7417 true Chr12: 2749945-2757361 Glycine max
Glyma.12G038200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 2749945-2750944 Glycine max
Glyma.12G038200 2.0kb upstream 2.0kb upstream 8417 true Chr12: 2750945-2759361 Glycine max
Glyma.12G038200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 2757362-2759361 Glycine max
Glyma.12G038200 2.0kb downstream 2.0kb downstream 8417 true Chr12: 2748945-2757361 Glycine max
Glyma.12G038200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 2748945-2750944 Glycine max
Glyma.12G038200 5.0kb upstream 5.0kb upstream 11417 true Chr12: 2750945-2762361 Glycine max
Glyma.12G038200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 2757362-2762361 Glycine max
Glyma.12G038200 5.0kb downstream 5.0kb downstream 11417 true Chr12: 2745945-2757361 Glycine max
Glyma.12G038200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 2745945-2750944 Glycine max
Glyma.12G038200 10.0kb upstream 10.0kb upstream 16417 true Chr12: 2750945-2767361 Glycine max
Glyma.12G038200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 2757362-2767361 Glycine max
Glyma.12G038200 10.0kb downstream 10.0kb downstream 16417 true Chr12: 2740945-2757361 Glycine max
Glyma.12G038200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 2740945-2750944 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307397 5265 Fabidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.277 0.0 43.7774   Low
cufflinks 21.761 0.0 75.1335 High High
cufflinks 14.9587 0.0 51.2632    
cufflinks 18.0296 0.0 61.9707    
cufflinks 16.774 0.0 58.1676    
cufflinks 21.5012 0.0 73.9906   High
cufflinks 16.5425 0.0 56.8194    
cufflinks 14.8389 0.0 51.0149    
cufflinks 13.1538 0.0 45.4859   Low
cufflinks 1.942        
cufflinks 0.339       Low
cufflinks 1.821        
cufflinks 1.888        
cufflinks 2.117        
cufflinks 0.34       Low
cufflinks 2.0        
cufflinks 0.794        
cufflinks 2.235        
cufflinks 2.758        
cufflinks 2.004        
cufflinks 0.628        
cufflinks 2.336        
cufflinks 3.32       High
cufflinks 0.452       Low
cufflinks 2.121        
cufflinks 0.574       Low

0 Strain