Gene : Glyma.09G192400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23238 - RNA BINDING PROTEIN Genomic Order:  1924
Name:  ? Glyma.09G192400 Secondary Identifier:  ? PAC:30484457
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G192400 0.5kb upstream 0.5kb upstream 5179 true Chr09: 41696380-41701558 Glycine max
Glyma.09G192400 0.5kb upstream 0.5kb upstream 500 false Chr09: 41701059-41701558 Glycine max
Glyma.09G192400 0.5kb downstream 0.5kb downstream 5179 true Chr09: 41695880-41701058 Glycine max
Glyma.09G192400 0.5kb downstream 0.5kb downstream 500 false Chr09: 41695880-41696379 Glycine max
Glyma.09G192400 1.0kb upstream 1.0kb upstream 5679 true Chr09: 41696380-41702058 Glycine max
Glyma.09G192400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 41701059-41702058 Glycine max
Glyma.09G192400 1.0kb downstream 1.0kb downstream 5679 true Chr09: 41695380-41701058 Glycine max
Glyma.09G192400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 41695380-41696379 Glycine max
Glyma.09G192400 2.0kb upstream 2.0kb upstream 6679 true Chr09: 41696380-41703058 Glycine max
Glyma.09G192400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 41701059-41703058 Glycine max
Glyma.09G192400 2.0kb downstream 2.0kb downstream 6679 true Chr09: 41694380-41701058 Glycine max
Glyma.09G192400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 41694380-41696379 Glycine max
Glyma.09G192400 5.0kb upstream 5.0kb upstream 9679 true Chr09: 41696380-41706058 Glycine max
Glyma.09G192400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 41701059-41706058 Glycine max
Glyma.09G192400 5.0kb downstream 5.0kb downstream 9679 true Chr09: 41691380-41701058 Glycine max
Glyma.09G192400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 41691380-41696379 Glycine max
Glyma.09G192400 10.0kb upstream 10.0kb upstream 14679 true Chr09: 41696380-41711058 Glycine max
Glyma.09G192400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 41701059-41711058 Glycine max
Glyma.09G192400 10.0kb downstream 10.0kb downstream 14679 true Chr09: 41686380-41701058 Glycine max
Glyma.09G192400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 41686380-41696379 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040867 5273 Angiosperm View MSA
122306595 5265 Fabidae View MSA
124065118 5270 Rosid View MSA
123752597 5271 Pentapetalae View MSA
122794158 5272 Eudicot View MSA
123429142 5275 Viridiplantae View MSA
121350516 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6798 0.0 70.4493   High
cufflinks 10.9808 0.0 52.659    
cufflinks 15.8935 0.0 83.9534   High
cufflinks 8.08039 0.0 36.1684   Low
cufflinks 12.5458 0.0 53.3233    
cufflinks 8.97394 0.0 39.4719    
cufflinks 9.53926 0.0 41.9419    
cufflinks 10.2302 0.0 46.5533    
cufflinks 10.4356 0.0 39.4972    
cufflinks 0.92       Low
cufflinks 1.738        
cufflinks 2.22       High
cufflinks 1.358        
cufflinks 1.65        
cufflinks 1.581        
cufflinks 1.686        
cufflinks 1.308       Low
cufflinks 2.497       High
cufflinks 2.29       High
cufflinks 1.803        
cufflinks 1.474        
cufflinks 1.859        
cufflinks 1.95        
cufflinks 1.603        
cufflinks 1.613        
cufflinks 1.599        

0 Strain