Gene : Glyma.09G016100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21297:SF2 - DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4 Genomic Order:  161
Name:  ? Glyma.09G016100 Secondary Identifier:  ? PAC:30483439
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G016100 0.5kb upstream 0.5kb upstream 4615 true Chr09: 1244886-1249500 Glycine max
Glyma.09G016100 0.5kb upstream 0.5kb upstream 500 false Chr09: 1244886-1245385 Glycine max
Glyma.09G016100 0.5kb downstream 0.5kb downstream 4615 true Chr09: 1245386-1250000 Glycine max
Glyma.09G016100 0.5kb downstream 0.5kb downstream 500 false Chr09: 1249501-1250000 Glycine max
Glyma.09G016100 1.0kb upstream 1.0kb upstream 5115 true Chr09: 1244386-1249500 Glycine max
Glyma.09G016100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 1244386-1245385 Glycine max
Glyma.09G016100 1.0kb downstream 1.0kb downstream 5115 true Chr09: 1245386-1250500 Glycine max
Glyma.09G016100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 1249501-1250500 Glycine max
Glyma.09G016100 2.0kb upstream 2.0kb upstream 6115 true Chr09: 1243386-1249500 Glycine max
Glyma.09G016100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 1243386-1245385 Glycine max
Glyma.09G016100 2.0kb downstream 2.0kb downstream 6115 true Chr09: 1245386-1251500 Glycine max
Glyma.09G016100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 1249501-1251500 Glycine max
Glyma.09G016100 5.0kb upstream 5.0kb upstream 9115 true Chr09: 1240386-1249500 Glycine max
Glyma.09G016100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 1240386-1245385 Glycine max
Glyma.09G016100 5.0kb downstream 5.0kb downstream 9115 true Chr09: 1245386-1254500 Glycine max
Glyma.09G016100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 1249501-1254500 Glycine max
Glyma.09G016100 10.0kb upstream 10.0kb upstream 14115 true Chr09: 1235386-1249500 Glycine max
Glyma.09G016100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 1235386-1245385 Glycine max
Glyma.09G016100 10.0kb downstream 10.0kb downstream 14115 true Chr09: 1245386-1259500 Glycine max
Glyma.09G016100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 1249501-1259500 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299634 5265 Fabidae View MSA
124061465 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.4544 0.0 6.52577   Low
cufflinks 9.99734 0.0 49.083   High
cufflinks 2.25764 0.0 13.3572   Low
cufflinks 4.26533 0.0 25.2638    
cufflinks 4.0173 0.0 25.2118    
cufflinks 5.19405 0.0 23.983    
cufflinks 11.4412 0.0 44.7924   High
cufflinks 5.60288 0.0 24.015    
cufflinks 5.32861 0.0 17.4159    
cufflinks 0.337        
cufflinks 0.089       Low
cufflinks 0.381        
cufflinks 0.448        
cufflinks 0.575        
cufflinks 0.071       Low
cufflinks 0.448        
cufflinks 0.137        
cufflinks 0.38        
cufflinks 0.916       High
cufflinks 0.277        
cufflinks 0.124        
cufflinks 0.382        
cufflinks 0.565        
cufflinks 0.068       Low
cufflinks 0.449        
cufflinks 0.187        

0 Strain