Gene : Glyma.08G146800 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR21297 - DNA-DIRECTED RNA POLYMERASE II Genomic Order:  1468
Name:  ? Glyma.08G146800 Secondary Identifier:  ? PAC:30540975
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G146800 0.5kb upstream 0.5kb upstream 3517 true Chr08: 11173407-11176923 Glycine max
Glyma.08G146800 0.5kb upstream 0.5kb upstream 500 false Chr08: 11176424-11176923 Glycine max
Glyma.08G146800 0.5kb downstream 0.5kb downstream 3517 true Chr08: 11172907-11176423 Glycine max
Glyma.08G146800 0.5kb downstream 0.5kb downstream 500 false Chr08: 11172907-11173406 Glycine max
Glyma.08G146800 1.0kb upstream 1.0kb upstream 4017 true Chr08: 11173407-11177423 Glycine max
Glyma.08G146800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11176424-11177423 Glycine max
Glyma.08G146800 1.0kb downstream 1.0kb downstream 4017 true Chr08: 11172407-11176423 Glycine max
Glyma.08G146800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11172407-11173406 Glycine max
Glyma.08G146800 2.0kb upstream 2.0kb upstream 5017 true Chr08: 11173407-11178423 Glycine max
Glyma.08G146800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11176424-11178423 Glycine max
Glyma.08G146800 2.0kb downstream 2.0kb downstream 5017 true Chr08: 11171407-11176423 Glycine max
Glyma.08G146800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11171407-11173406 Glycine max
Glyma.08G146800 5.0kb upstream 5.0kb upstream 8017 true Chr08: 11173407-11181423 Glycine max
Glyma.08G146800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11176424-11181423 Glycine max
Glyma.08G146800 5.0kb downstream 5.0kb downstream 8017 true Chr08: 11168407-11176423 Glycine max
Glyma.08G146800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11168407-11173406 Glycine max
Glyma.08G146800 10.0kb upstream 10.0kb upstream 13017 true Chr08: 11173407-11186423 Glycine max
Glyma.08G146800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11176424-11186423 Glycine max
Glyma.08G146800 10.0kb downstream 10.0kb downstream 13017 true Chr08: 11163407-11176423 Glycine max
Glyma.08G146800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11163407-11173406 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248469 5265 Fabidae Singleton cluster - no MSA
124039164 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.10564 0.0 0.47781 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.031     Low  
cufflinks 0.022     Low  
cufflinks 0.158       High
cufflinks 0.058     Low  
cufflinks 0.005     Low Low
cufflinks 0.003     Low Low
cufflinks 0.004     Low Low
cufflinks 0.062     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.036     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  
cufflinks 0.013     Low  

0 Strain