Protein Family : RNA-binding (RRM/RBD/RNP motifs) family protein 122040882

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  117

117 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
30078.t000116 (1 of 3) K11294 - nucleolin (NCL, NSR1) R. communis v0.1 2612   30078: 746713-749324
Cucsa.050070 (1 of 163) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) C. sativus v1.0 2619   scaffold00551: 202030-204648
Cucsa.306870 (1 of 15) KOG0131 - Splicing factor 3b, subunit 4 C. sativus v1.0 2100   scaffold02977: 262354-264453
AT3G53460 (1 of 1) KOG0131//KOG0144 - Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) A. thaliana TAIR10 CP29 2335   Chr3: 19819185-19821519
AT2G37220 (1 of 3) K11294 - nucleolin (NCL, NSR1) A. thaliana TAIR10 1885   Chr2: 15634525-15636409
Thhalv10017023m.g (1 of 1) KOG0114//KOG0131//KOG0144//KOG4210 - Predicted RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) // Nuclear localization sequence binding protein E. salsugineum v1.0 1914   scaffold_10: 9118388-9120301
Thhalv10010545m.g (1 of 1) KOG0121//KOG0131//KOG0144 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) E. salsugineum v1.0 2135   scaffold_16: 1075766-1077900
Ciclev10012331m.g (1 of 24) KOG0131 - Splicing factor 3b, subunit 4 C. clementina v1.0 2398   scaffold_6: 10082734-10085131
Lus10023191.g (1 of 1) KOG0105//KOG0106//KOG0110//KOG0131 - Alternative splicing factor ASF/SF2 (RRM superfamily) // Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1447   scaffold325: 865961-867407
Lus10002222.g (1 of 37) KOG0131 - Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1400   scaffold499: 62332-63731
Lus10026514.g (1 of 37) KOG0131 - Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1409   scaffold617: 192856-194264
Gorai.009G416900 (1 of 9) PF00076//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) G. raimondii v2.1 2838   Chr09: 64539378-64542215
Gorai.006G166300 (1 of 32) KOG0131 - Splicing factor 3b, subunit 4 G. raimondii v2.1 2649   Chr06: 42601213-42603861
Thecc1EG022172 (1 of 3) K11294 - nucleolin (NCL, NSR1) T. cacao v1.1 2945   scaffold_5: 2984190-2987134
Migut.J00538 (1 of 28) KOG0131 - Splicing factor 3b, subunit 4 M. guttatus v2.0 1966   scaffold_10: 2843942-2845907
Migut.L01683 (1 of 1) KOG0107//KOG0123//KOG0144//KOG0145//KOG0146 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Polyadenylate-binding protein (RRM superfamily) // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) // RNA-binding protein ELAV/HU (RRM superfamily) // RNA-binding protein ETR-3 (RRM superfamily) M. guttatus v2.0 1759   scaffold_12: 24904127-24905885
Araha.14169s0015 (1 of 25) KOG0131 - Splicing factor 3b, subunit 4 A. halleri v1.1 1648   Scaffold14169: 46158-47805
Cagra.0612s0072 (1 of 1) KOG0131//KOG0144 - Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) C. grandiflora v1.1 2154   Scaffold612: 255534-257687
Cagra.0666s0022 (1 of 25) KOG0131 - Splicing factor 3b, subunit 4 C. grandiflora v1.1 1877   Scaffold666: 84159-86035
Glyma.10G058500 (1 of 43) KOG0131 - Splicing factor 3b, subunit 4 G. max Wm82.a2.v1 2682   Chr10: 5401666-5404347
Glyma.13G145200 (1 of 43) KOG0131 - Splicing factor 3b, subunit 4 G. max Wm82.a2.v1 3460   Chr13: 25821836-25825295
Brara.G01591 (1 of 1) KOG0121//KOG0131//KOG0144 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) B. rapa FPsc v1.3 1788   A07: 15752508-15754295
Brara.D02261 (1 of 1) KOG0131//KOG0144 - Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) B. rapa FPsc v1.3 1629   A04: 18202348-18203976
Brara.E00783 (1 of 44) KOG0131 - Splicing factor 3b, subunit 4 B. rapa FPsc v1.3 1674   A05: 4532864-4534537
Brara.I03636 (1 of 1) KOG0121//KOG0131//KOG0144//KOG4210 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) // Nuclear localization sequence binding protein B. rapa FPsc v1.3 1739   A09: 33890865-33892603
Brara.C01867 (1 of 1) KOG0131//KOG0144//KOG4210 - Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) // Nuclear localization sequence binding protein B. rapa FPsc v1.3 1680   A03: 9218890-9220569
Bostr.11793s0047 (1 of 1) KOG0146 - RNA-binding protein ETR-3 (RRM superfamily) B. stricta v1.2 2369   Scaffold11793: 209813-212181
Bostr.23794s0362 (1 of 26) KOG0131 - Splicing factor 3b, subunit 4 B. stricta v1.2 1951   Scaffold23794: 2096553-2098503
Medtr1g064230 (1 of 20) KOG0131 - Splicing factor 3b, subunit 4 M. truncatula Mt4.0v1 1847   chr1: 28254735-28256581
SapurV1A.0141s0130 (1 of 8) K11294 - nucleolin (NCL, NSR1) S. purpurea v1.0 2790   chr06: 11954345-11957134

117 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Migut.L01683.1.p M. guttatus v2.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Migut.J00538.1.p M. guttatus v2.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
AL5G34380.t1 A. lyrata v2.1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
AL4G33590.t1 A. lyrata v2.1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Tp57577_TGAC_v2_mRNA25546 T. pratense v2 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 1 5273 Angiosperm
DCAR_017699 D. carota v2.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
DCAR_014987 D. carota v2.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Solyc09g007850.2.1 S. lycopersicum ITAG2.4 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Solyc10g086150.1.1 S. lycopersicum ITAG2.4 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Araha.14169s0015.1.p A. halleri v1.1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 1 5273 Angiosperm
AUR62039878-RA C. quinoa v1.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
AUR62040470-RA C. quinoa v1.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Cagra.0666s0022.1.p C. grandiflora v1.1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Cagra.0612s0072.1.p C. grandiflora v1.1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Glyma.10G058500.1.p G. max Wm82.a2.v1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Glyma.13G145200.1.p G. max Wm82.a2.v1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Brara.C01867.1.p B. rapa FPsc v1.3 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 5 5273 Angiosperm
Brara.D02261.1.p B. rapa FPsc v1.3 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 5 5273 Angiosperm
Brara.E00783.1.p B. rapa FPsc v1.3 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 5 5273 Angiosperm
Brara.G01591.1.p B. rapa FPsc v1.3 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 5 5273 Angiosperm
Brara.I03636.1.p B. rapa FPsc v1.3 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 5 5273 Angiosperm
Bostr.23794s0362.1.p B. stricta v1.2 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Bostr.11793s0047.1.p B. stricta v1.2 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Medtr1g064230.2 M. truncatula Mt4.0v1 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 1 5273 Angiosperm
SapurV1A.0141s0130.1.p S. purpurea v1.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
SapurV1A.1634s0020.1.p S. purpurea v1.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00148.47 A. trichopoda v1.0 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 1 5273 Angiosperm
AT2G37220.1 A. thaliana TAIR10 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
AT3G53460.4 A. thaliana TAIR10 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 2 5273 Angiosperm
Traes_2DS_01D518748.1 T. aestivum v2.2 122040882 RNA-binding (RRM/RBD/RNP motifs) family protein 5 5273 Angiosperm