Protein Family : Smg-4/UPF3 family protein 124070961

Method ID:  5270 Method Name:  Rosid
Sequence Alignment:  View MSA Member Count:  57

57 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29765.t000010 (1 of 1) PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 R. communis v0.1 7573   29765: 93552-101124
30170.t000145 (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED R. communis v0.1 3908   30170: 4653417-4657324
Cucsa.061690 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. sativus v1.0 6964   scaffold00651: 183865-190828
orange1.1g010224m.g (1 of 1) PTHR13112:SF0 - FI21285P1 C. sinensis v1.1 8458   scaffold00792: 12384-20841
orange1.1g009733m.g (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. sinensis v1.1 6620   scaffold00363: 98421-105040
AT1G33980 (1 of 1) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) A. thaliana TAIR10 UPF3 3431   Chr1: 12351593-12355023
Thhalv10007455m.g (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN E. salsugineum v1.0 3838   scaffold_5: 1136822-1140659
Ciclev10000901m.g (1 of 1) PTHR13112:SF0 - FI21285P1 C. clementina v1.0 8767   scaffold_5: 4461971-4470737
Ciclev10019695m.g (1 of 4) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. clementina v1.0 7122   scaffold_3: 19310540-19317661
Lus10037346.g (1 of 3) PTHR13112:SF0 - FI21285P1 L. usitatissimum v1.0 3955   scaffold462: 1423142-1427096
Lus10035769.g (1 of 3) PTHR13112:SF0 - FI21285P1 L. usitatissimum v1.0 4528   scaffold464: 1268974-1273501
Gorai.008G045900 (1 of 2) PTHR13112:SF0 - FI21285P1 G. raimondii v2.1 6349   Chr08: 6206289-6212637
Gorai.010G229700 (1 of 2) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN G. raimondii v2.1 5794   Chr10: 60134003-60139796
Gorai.005G265700 (1 of 2) PTHR13112:SF0 - FI21285P1 G. raimondii v2.1 5786   Chr05: 63895783-63901568
Thecc1EG006150 (1 of 1) PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 T. cacao v1.1 6099   scaffold_2: 981167-987265
Thecc1EG028841 (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED T. cacao v1.1 13490   scaffold_6: 18791650-18805139
Araha.25545s0002 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN A. halleri v1.1 2823   Scaffold25545: 1490-4312
Cagra.6333s0004 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. grandiflora v1.1 3515   Scaffold6333: 17986-21500
Glyma.06G324500 (1 of 3) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN G. max Wm82.a2.v1 9560   Chr06: 51224621-51234180
Glyma.12G165900 (1 of 2) PTHR13112:SF0 - FI21285P1 G. max Wm82.a2.v1 6290   Chr12: 32018880-32025169
Glyma.16G002300 (1 of 2) PTHR13112:SF0 - FI21285P1 G. max Wm82.a2.v1 6771   Chr16: 114807-121577
Brara.E01837 (1 of 3) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN B. rapa FPsc v1.3 3026   A05: 14837732-14840757
Brara.C00968 (1 of 3) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN B. rapa FPsc v1.3 3258   A03: 4549343-4552600
Bostr.1040s0004 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN B. stricta v1.2 3603   Scaffold1040: 62674-66276
Medtr2g005600 (1 of 1) PTHR13112:SF0 - FI21285P1 M. truncatula Mt4.0v1 5498   chr2: 225129-230626
Medtr3g005510 (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN M. truncatula Mt4.0v1 8028   chr3: 230542-238569
SapurV1A.0942s0050 (1 of 4) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) S. purpurea v1.0 7643   Scaffold0942: 22808-30450
SapurV1A.1560s0050 (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED S. purpurea v1.0 7322   Scaffold1560: 39979-47300
SapurV1A.0225s0380 (1 of 4) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) S. purpurea v1.0 7647   chr01: 18810545-18818191
SapurV1A.0136s0230 (1 of 4) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) S. purpurea v1.0 6418   chr03: 225470-231887

57 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Thhalv10007455m E. salsugineum v1.0 124070961 Smg-4/UPF3 family protein 1 5270 Rosid
Ciclev10019695m C. clementina v1.0 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Gorai.008G045900.1 G. raimondii v2.1 124070961 Smg-4/UPF3 family protein 3 5270 Rosid
Thecc1EG028841t3 T. cacao v1.1 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Bostr.1040s0004.1.p B. stricta v1.2 124070961 Smg-4/UPF3 family protein 1 5270 Rosid
SapurV1A.0225s0380.1.p S. purpurea v1.0 124070961 Smg-4/UPF3 family protein 4 5270 Rosid
SapurV1A.0942s0050.1.p S. purpurea v1.0 124070961 Smg-4/UPF3 family protein 4 5270 Rosid
Tp57577_TGAC_v2_mRNA26375 T. pratense v2 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Tp57577_TGAC_v2_mRNA30254 T. pratense v2 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Phvul.005G000800.1.p P. vulgaris v2.1 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Potri.019G077500.1.p P. trichocarpa v3.1 124070961 Smg-4/UPF3 family protein 3 5270 Rosid
Podel.19G080800.1.p P. deltoides WV94 v2.1 124070961 Smg-4/UPF3 family protein 3 5270 Rosid
VIT_218s0075g00710.1 V. vinifera v2.1 124070961 Smg-4/UPF3 family protein 3 5270 Rosid
MD15G1438000 M. domestica v1.1 124070961 Smg-4/UPF3 family protein 4 5270 Rosid
MD08G1243800 M. domestica v1.1 124070961 Smg-4/UPF3 family protein 4 5270 Rosid
Ca_18734 C. arietinum v1.0 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
gene25065-v1.0-hybrid.t1 F. vesca v2.0.a2 124070961 Smg-4/UPF3 family protein 1 5270 Rosid
29765.m000728 R. communis v0.1 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
30170.m013733 R. communis v0.1 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Cucsa.061690.1 C. sativus v1.0 124070961 Smg-4/UPF3 family protein 1 5270 Rosid
orange1.1g009733m C. sinensis v1.1 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
orange1.1g010224m C. sinensis v1.1 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
AT1G33980.2 A. thaliana TAIR10 124070961 Smg-4/UPF3 family protein 1 5270 Rosid
Ciclev10000901m C. clementina v1.0 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Lus10035769 L. usitatissimum v1.0 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Lus10037346 L. usitatissimum v1.0 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Gorai.010G229700.1 G. raimondii v2.1 124070961 Smg-4/UPF3 family protein 3 5270 Rosid
Gorai.005G265700.1 G. raimondii v2.1 124070961 Smg-4/UPF3 family protein 3 5270 Rosid
Thecc1EG006150t1 T. cacao v1.1 124070961 Smg-4/UPF3 family protein 2 5270 Rosid
Araha.25545s0002.1.p A. halleri v1.1 124070961 Smg-4/UPF3 family protein 1 5270 Rosid