GO Term : GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding GO
Namespace:  molecular_function Obsolete:  false
description  Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
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0 Cross References

1 Data Sets

Name URL
InterPro domain GO annotations  

1 Ontology

Name
GO

38 Ontology Annotations

Class GO Term Gene Name Db
OntologyAnnotation GO:0000978 Gohir.A13G170100.1.p GO
GOAnnotation GO:0000978 Gohir.A13G170100  
GOAnnotation GO:0000978 Roisl.0213s0582  
GOAnnotation GO:0000978 Roisl.0213s0583  
OntologyAnnotation GO:0000978 Roisl.0213s0582.1.p GO
OntologyAnnotation GO:0000978 Roisl.0213s0583.1.p GO
OntologyAnnotation GO:0000978 Zm00001d025020_P002 GO
GOAnnotation GO:0000978 Zm00001d025020  
GOAnnotation GO:0000978 MgTOL.G0902  
OntologyAnnotation GO:0000978 MgTOL.G0902.1.p GO
GOAnnotation GO:0000978 Gomus.A13G196900  
OntologyAnnotation GO:0000978 Gomus.A13G196900.1.p GO
GOAnnotation GO:0000978 Gotom.A13G206100  
OntologyAnnotation GO:0000978 Gotom.A13G206100.1.p GO
OntologyAnnotation GO:0000978 Gobar.A13G190000.1.p GO
GOAnnotation GO:0000978 Gobar.A13G190000  
GOAnnotation GO:0000978 Gohir.A13G170100  
OntologyAnnotation GO:0000978 Gohir.A13G170100.1.p GO
OntologyAnnotation GO:0000978 Gohir.A13G170100.2.p GO
OntologyAnnotation GO:0000978 Godar.A13G202100.1.p GO
GOAnnotation GO:0000978 Godar.A13G202100  
GOAnnotation GO:0000978 VuSuvita2.07G126900  
OntologyAnnotation GO:0000978 VuSuvita2.07G126900.1.p GO
GOAnnotation GO:0000978 VuSanzi.07G123400  
OntologyAnnotation GO:0000978 VuSanzi.07G123400.1.p GO
GOAnnotation GO:0000978 MgTOL.G0902  
OntologyAnnotation GO:0000978 MgTOL.G0902.1.p GO
GOAnnotation GO:0000978 SbiRTX430.03G037900  
OntologyAnnotation GO:0000978 SbiRTX430.03G037900.1.p GO
GOAnnotation GO:0000978 VuTZ30.07G121400  

18 Parents

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
GO:0003674 molecular_function Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
GO:1901363 heterocyclic compound binding Interacting selectively and non-covalently with heterocyclic compound.
GO:0097159 organic cyclic compound binding Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.
GO:1990837 sequence-specific double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.
GO:0000975 regulatory region DNA binding Interacting selectively and non-covalently with a DNA region that regulates a DNA-based process. Such processes include transcription, DNA replication, and DNA repair.
GO:0001067 regulatory region nucleic acid binding Interacting selectively and non-covalently with a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.
GO:0000976 transcription regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
GO:0044212 transcription regulatory region DNA binding Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
GO:0001012 RNA polymerase II regulatory region DNA binding Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by RNA polymerase II. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
GO:0000987 core promoter proximal region sequence-specific DNA binding Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to the core promoter. The transcribed region might be described as a gene, cistron, or operon.
GO:0001159 core promoter proximal region DNA binding Interacting selectively and non-covalently with a region of DNA that is in cis with and relatively close to the core promoter. The transcribed region might be described as a gene, cistron, or operon.

29 Relations

Relationship
Parent Term . Identifier
Child Term . Identifier
is_a GO:0000987 GO:0000978
is_a GO:0000977 GO:0000978
is_a GO:0003677 GO:0000978
is_a GO:0003676 GO:0000978
is_a GO:0001159 GO:0000978
is_a GO:0097159 GO:0000978
is_a GO:0044212 GO:0000978
is_a GO:0000976 GO:0000978
is_a GO:0003690 GO:0000978
is_a GO:0043565 GO:0000978
is_a GO:0000975 GO:0000978
is_a GO:0001012 GO:0000978
is_a GO:0001067 GO:0000978
is_a GO:0005488 GO:0000978
is_a GO:0003674 GO:0000978
is_a GO:1901363 GO:0000978
is_a GO:1990837 GO:0000978
has_part GO:0000978 GO:0000982
has_part GO:0000978 GO:0001074
has_part GO:0000978 GO:0001077
has_part GO:0000978 GO:0001078
has_part GO:0000978 GO:0001201
has_part GO:0000978 GO:0001202
has_part GO:0000978 GO:0001203
has_part GO:0000978 GO:0001211
has_part GO:0000978 GO:0001212
has_part GO:0000978 GO:0001213
has_part GO:0000978 GO:0001214
is_a GO:0000978 GO:0044377

1 Synonyms

Name Type
RNA polymerase II upstream activating sequence (UAS) sequence-specific DNA binding synonym