Gene : Sobic.005G115500 S. bicolor v3.1.1
Defline:  (1 of 1) 1.5.1.3//2.1.1.45 - Dihydrofolate reductase / Tetrahydrofolate dehydrogenase // Thymidylate synthase Genomic Order:  1246
Name:  ? Sobic.005G115500 Secondary Identifier:  ? PAC:37924831
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-3841 Sorghum bicolor pathologic  
Sbicolor PWY-6612 Sorghum bicolor pathologic  
Sbicolor PWY-6614 Sorghum bicolor pathologic  
Sbicolor PWY-7184 Sorghum bicolor pathologic  
Sbicolor PWY-7199 Sorghum bicolor pathologic  
Sbicolor PWY-7200 Sorghum bicolor pathologic  
Sbicolor PWY-7210 Sorghum bicolor pathologic  
Sbicolor PWY-7211 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G115500 0.5kb upstream 0.5kb upstream 13285 true Chr05: 50599128-50612412 Sorghum bicolor
Sobic.005G115500 0.5kb upstream 0.5kb upstream 500 false Chr05: 50599128-50599627 Sorghum bicolor
Sobic.005G115500 0.5kb downstream 0.5kb downstream 13285 true Chr05: 50599628-50612912 Sorghum bicolor
Sobic.005G115500 0.5kb downstream 0.5kb downstream 500 false Chr05: 50612413-50612912 Sorghum bicolor
Sobic.005G115500 1.0kb upstream 1.0kb upstream 13785 true Chr05: 50598628-50612412 Sorghum bicolor
Sobic.005G115500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 50598628-50599627 Sorghum bicolor
Sobic.005G115500 1.0kb downstream 1.0kb downstream 13785 true Chr05: 50599628-50613412 Sorghum bicolor
Sobic.005G115500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 50612413-50613412 Sorghum bicolor
Sobic.005G115500 2.0kb upstream 2.0kb upstream 14785 true Chr05: 50597628-50612412 Sorghum bicolor
Sobic.005G115500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 50597628-50599627 Sorghum bicolor
Sobic.005G115500 2.0kb downstream 2.0kb downstream 14785 true Chr05: 50599628-50614412 Sorghum bicolor
Sobic.005G115500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 50612413-50614412 Sorghum bicolor
Sobic.005G115500 5.0kb upstream 5.0kb upstream 17785 true Chr05: 50594628-50612412 Sorghum bicolor
Sobic.005G115500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 50594628-50599627 Sorghum bicolor
Sobic.005G115500 5.0kb downstream 5.0kb downstream 17785 true Chr05: 50599628-50617412 Sorghum bicolor
Sobic.005G115500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 50612413-50617412 Sorghum bicolor
Sobic.005G115500 10.0kb upstream 10.0kb upstream 22785 true Chr05: 50589628-50612412 Sorghum bicolor
Sobic.005G115500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 50589628-50599627 Sorghum bicolor
Sobic.005G115500 10.0kb downstream 10.0kb downstream 22785 true Chr05: 50599628-50622412 Sorghum bicolor
Sobic.005G115500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 50612413-50622412 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193158 5267 Panicoideae View MSA
124576783 5269 Grass View MSA
122041907 5273 Angiosperm View MSA
121345404 5274 Embryophyte View MSA
123424391 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.928        
cufflinks 0.826       Low
cufflinks 1.805        
cufflinks 1.84        
cufflinks 2.74        
cufflinks 1.58        
cufflinks 2.62        
cufflinks 0.995       Low
cufflinks 2.147        
cufflinks 3.304        
cufflinks 2.778        
cufflinks 3.326        
cufflinks 2.727        
cufflinks 3.464        
cufflinks 3.509        
cufflinks 1.287       Low
cufflinks 3.04        
cufflinks 2.915        
cufflinks 1.275       Low
cufflinks 2.94        
cufflinks 4.437       High
cufflinks 3.421        
cufflinks 3.766       High
cufflinks 3.905       High
cufflinks 1.271       Low
cufflinks 0.842       Low
cufflinks 2.666        
cufflinks 1.198       Low
cufflinks 1.474        
cufflinks 4.087       High

0 Strain