Gene : Thecc1EG030466 T. cacao v1.1
Defline:  (1 of 1) PTHR21297//PTHR21297:SF2 - DNA-DIRECTED RNA POLYMERASE II // DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4 Genomic Order:  2347
Name:  ? Thecc1EG030466 Secondary Identifier:  ? PAC:27440886
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030466 0.5kb upstream 0.5kb upstream 3749 true scaffold_6: 27165350-27169098 Theobroma cacao
Thecc1EG030466 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 27165350-27165849 Theobroma cacao
Thecc1EG030466 0.5kb downstream 0.5kb downstream 3749 true scaffold_6: 27165850-27169598 Theobroma cacao
Thecc1EG030466 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 27169099-27169598 Theobroma cacao
Thecc1EG030466 1.0kb upstream 1.0kb upstream 4249 true scaffold_6: 27164850-27169098 Theobroma cacao
Thecc1EG030466 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 27164850-27165849 Theobroma cacao
Thecc1EG030466 1.0kb downstream 1.0kb downstream 4249 true scaffold_6: 27165850-27170098 Theobroma cacao
Thecc1EG030466 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 27169099-27170098 Theobroma cacao
Thecc1EG030466 2.0kb upstream 2.0kb upstream 5249 true scaffold_6: 27163850-27169098 Theobroma cacao
Thecc1EG030466 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 27163850-27165849 Theobroma cacao
Thecc1EG030466 2.0kb downstream 2.0kb downstream 5249 true scaffold_6: 27165850-27171098 Theobroma cacao
Thecc1EG030466 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 27169099-27171098 Theobroma cacao
Thecc1EG030466 5.0kb upstream 5.0kb upstream 8249 true scaffold_6: 27160850-27169098 Theobroma cacao
Thecc1EG030466 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 27160850-27165849 Theobroma cacao
Thecc1EG030466 5.0kb downstream 5.0kb downstream 8249 true scaffold_6: 27165850-27174098 Theobroma cacao
Thecc1EG030466 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 27169099-27174098 Theobroma cacao
Thecc1EG030466 10.0kb upstream 10.0kb upstream 13249 true scaffold_6: 27155850-27169098 Theobroma cacao
Thecc1EG030466 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 27155850-27165849 Theobroma cacao
Thecc1EG030466 10.0kb downstream 10.0kb downstream 13249 true scaffold_6: 27165850-27179098 Theobroma cacao
Thecc1EG030466 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 27169099-27179098 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833916 5264 Brassicales-Malvales View MSA
124343792 5266 SBM View MSA
124240885 5268 Malvidae View MSA
124061465 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain