Gene : Thecc1EG024854 T. cacao v1.1
Defline:  (1 of 2) PTHR27000//PTHR27000:SF136 - FAMILY NOT NAMED // POLYGALACTURONASE INHIBITOR 1-RELATED Genomic Order:  1690
Name:  ? Thecc1EG024854 Secondary Identifier:  ? PAC:27422273
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024854 0.5kb upstream 0.5kb upstream 1992 true scaffold_5: 29119525-29121516 Theobroma cacao
Thecc1EG024854 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 29121017-29121516 Theobroma cacao
Thecc1EG024854 0.5kb downstream 0.5kb downstream 1992 true scaffold_5: 29119025-29121016 Theobroma cacao
Thecc1EG024854 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 29119025-29119524 Theobroma cacao
Thecc1EG024854 1.0kb upstream 1.0kb upstream 2492 true scaffold_5: 29119525-29122016 Theobroma cacao
Thecc1EG024854 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 29121017-29122016 Theobroma cacao
Thecc1EG024854 1.0kb downstream 1.0kb downstream 2492 true scaffold_5: 29118525-29121016 Theobroma cacao
Thecc1EG024854 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 29118525-29119524 Theobroma cacao
Thecc1EG024854 2.0kb upstream 2.0kb upstream 3492 true scaffold_5: 29119525-29123016 Theobroma cacao
Thecc1EG024854 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 29121017-29123016 Theobroma cacao
Thecc1EG024854 2.0kb downstream 2.0kb downstream 3492 true scaffold_5: 29117525-29121016 Theobroma cacao
Thecc1EG024854 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 29117525-29119524 Theobroma cacao
Thecc1EG024854 5.0kb upstream 5.0kb upstream 6492 true scaffold_5: 29119525-29126016 Theobroma cacao
Thecc1EG024854 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 29121017-29126016 Theobroma cacao
Thecc1EG024854 5.0kb downstream 5.0kb downstream 6492 true scaffold_5: 29114525-29121016 Theobroma cacao
Thecc1EG024854 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 29114525-29119524 Theobroma cacao
Thecc1EG024854 10.0kb upstream 10.0kb upstream 11492 true scaffold_5: 29119525-29131016 Theobroma cacao
Thecc1EG024854 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 29121017-29131016 Theobroma cacao
Thecc1EG024854 10.0kb downstream 10.0kb downstream 11492 true scaffold_5: 29109525-29121016 Theobroma cacao
Thecc1EG024854 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 29109525-29119524 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838637 5264 Brassicales-Malvales View MSA
124337599 5266 SBM View MSA
124251810 5268 Malvidae View MSA
124063977 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain