Gene : Thecc1EG022636 T. cacao v1.1
Defline:  (1 of 1) PF00190//PF01535//PF12854//PF13041//PF14432 - Cupin (Cupin_1) // PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  892
Name:  ? Thecc1EG022636 Secondary Identifier:  ? PAC:27423532
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022636 0.5kb upstream 0.5kb upstream 4970 true scaffold_5: 6189227-6194196 Theobroma cacao
Thecc1EG022636 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6189227-6189726 Theobroma cacao
Thecc1EG022636 0.5kb downstream 0.5kb downstream 4970 true scaffold_5: 6189727-6194696 Theobroma cacao
Thecc1EG022636 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6194197-6194696 Theobroma cacao
Thecc1EG022636 1.0kb upstream 1.0kb upstream 5470 true scaffold_5: 6188727-6194196 Theobroma cacao
Thecc1EG022636 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6188727-6189726 Theobroma cacao
Thecc1EG022636 1.0kb downstream 1.0kb downstream 5470 true scaffold_5: 6189727-6195196 Theobroma cacao
Thecc1EG022636 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6194197-6195196 Theobroma cacao
Thecc1EG022636 2.0kb upstream 2.0kb upstream 6470 true scaffold_5: 6187727-6194196 Theobroma cacao
Thecc1EG022636 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6187727-6189726 Theobroma cacao
Thecc1EG022636 2.0kb downstream 2.0kb downstream 6470 true scaffold_5: 6189727-6196196 Theobroma cacao
Thecc1EG022636 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6194197-6196196 Theobroma cacao
Thecc1EG022636 5.0kb upstream 5.0kb upstream 9470 true scaffold_5: 6184727-6194196 Theobroma cacao
Thecc1EG022636 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6184727-6189726 Theobroma cacao
Thecc1EG022636 5.0kb downstream 5.0kb downstream 9470 true scaffold_5: 6189727-6199196 Theobroma cacao
Thecc1EG022636 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6194197-6199196 Theobroma cacao
Thecc1EG022636 10.0kb upstream 10.0kb upstream 14470 true scaffold_5: 6179727-6194196 Theobroma cacao
Thecc1EG022636 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6179727-6189726 Theobroma cacao
Thecc1EG022636 10.0kb downstream 10.0kb downstream 14470 true scaffold_5: 6189727-6204196 Theobroma cacao
Thecc1EG022636 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6194197-6204196 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
123838739 5264 Brassicales-Malvales View MSA
124348306 5266 SBM View MSA
124245911 5268 Malvidae View MSA
124069869 5270 Rosid View MSA
123747273 5271 Pentapetalae View MSA
122795233 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain