Gene : Thecc1EG020290 T. cacao v1.1
Defline:  (1 of 1) PF01535//PF12854//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2054
Name:  ? Thecc1EG020290 Secondary Identifier:  ? PAC:27454694
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020290 0.5kb upstream 0.5kb upstream 4343 true scaffold_4: 27704921-27709263 Theobroma cacao
Thecc1EG020290 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 27708764-27709263 Theobroma cacao
Thecc1EG020290 0.5kb downstream 0.5kb downstream 4343 true scaffold_4: 27704421-27708763 Theobroma cacao
Thecc1EG020290 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 27704421-27704920 Theobroma cacao
Thecc1EG020290 1.0kb upstream 1.0kb upstream 4843 true scaffold_4: 27704921-27709763 Theobroma cacao
Thecc1EG020290 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 27708764-27709763 Theobroma cacao
Thecc1EG020290 1.0kb downstream 1.0kb downstream 4843 true scaffold_4: 27703921-27708763 Theobroma cacao
Thecc1EG020290 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 27703921-27704920 Theobroma cacao
Thecc1EG020290 2.0kb upstream 2.0kb upstream 5843 true scaffold_4: 27704921-27710763 Theobroma cacao
Thecc1EG020290 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 27708764-27710763 Theobroma cacao
Thecc1EG020290 2.0kb downstream 2.0kb downstream 5843 true scaffold_4: 27702921-27708763 Theobroma cacao
Thecc1EG020290 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 27702921-27704920 Theobroma cacao
Thecc1EG020290 5.0kb upstream 5.0kb upstream 8843 true scaffold_4: 27704921-27713763 Theobroma cacao
Thecc1EG020290 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 27708764-27713763 Theobroma cacao
Thecc1EG020290 5.0kb downstream 5.0kb downstream 8843 true scaffold_4: 27699921-27708763 Theobroma cacao
Thecc1EG020290 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 27699921-27704920 Theobroma cacao
Thecc1EG020290 10.0kb upstream 10.0kb upstream 13843 true scaffold_4: 27704921-27718763 Theobroma cacao
Thecc1EG020290 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 27708764-27718763 Theobroma cacao
Thecc1EG020290 10.0kb downstream 10.0kb downstream 13843 true scaffold_4: 27694921-27708763 Theobroma cacao
Thecc1EG020290 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 27694921-27704920 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834441 5264 Brassicales-Malvales View MSA
124346040 5266 SBM View MSA
124242384 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain