Gene : Thecc1EG014767 T. cacao v1.1
Defline:  (1 of 2) K01880 - glycyl-tRNA synthetase (GARS, glyS1) Genomic Order:  1430
Name:  ? Thecc1EG014767 Secondary Identifier:  ? PAC:27448494
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG014767 0.5kb upstream 0.5kb upstream 5316 true scaffold_3: 24389941-24395256 Theobroma cacao
Thecc1EG014767 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 24389941-24390440 Theobroma cacao
Thecc1EG014767 0.5kb downstream 0.5kb downstream 5316 true scaffold_3: 24390441-24395756 Theobroma cacao
Thecc1EG014767 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 24395257-24395756 Theobroma cacao
Thecc1EG014767 1.0kb upstream 1.0kb upstream 5816 true scaffold_3: 24389441-24395256 Theobroma cacao
Thecc1EG014767 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 24389441-24390440 Theobroma cacao
Thecc1EG014767 1.0kb downstream 1.0kb downstream 5816 true scaffold_3: 24390441-24396256 Theobroma cacao
Thecc1EG014767 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 24395257-24396256 Theobroma cacao
Thecc1EG014767 2.0kb upstream 2.0kb upstream 6816 true scaffold_3: 24388441-24395256 Theobroma cacao
Thecc1EG014767 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 24388441-24390440 Theobroma cacao
Thecc1EG014767 2.0kb downstream 2.0kb downstream 6816 true scaffold_3: 24390441-24397256 Theobroma cacao
Thecc1EG014767 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 24395257-24397256 Theobroma cacao
Thecc1EG014767 5.0kb upstream 5.0kb upstream 9816 true scaffold_3: 24385441-24395256 Theobroma cacao
Thecc1EG014767 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 24385441-24390440 Theobroma cacao
Thecc1EG014767 5.0kb downstream 5.0kb downstream 9816 true scaffold_3: 24390441-24400256 Theobroma cacao
Thecc1EG014767 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 24395257-24400256 Theobroma cacao
Thecc1EG014767 10.0kb upstream 10.0kb upstream 14816 true scaffold_3: 24380441-24395256 Theobroma cacao
Thecc1EG014767 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 24380441-24390440 Theobroma cacao
Thecc1EG014767 10.0kb downstream 10.0kb downstream 14816 true scaffold_3: 24390441-24405256 Theobroma cacao
Thecc1EG014767 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 24395257-24405256 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123818246 5264 Brassicales-Malvales Singleton cluster - no MSA
124314566 5266 SBM Singleton cluster - no MSA
124163549 5268 Malvidae Singleton cluster - no MSA
123887379 5270 Rosid Singleton cluster - no MSA
123751424 5271 Pentapetalae View MSA
122793864 5272 Eudicot View MSA
122047180 5273 Angiosperm View MSA
121348773 5274 Embryophyte View MSA
123423981 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain