Gene : Thecc1EG008329 T. cacao v1.1
Defline:  (1 of 2) K01880 - glycyl-tRNA synthetase (GARS, glyS1) Genomic Order:  1869
Name:  ? Thecc1EG008329 Secondary Identifier:  ? PAC:27464216
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG008329 0.5kb upstream 0.5kb upstream 5952 true scaffold_2: 12664273-12670224 Theobroma cacao
Thecc1EG008329 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 12669725-12670224 Theobroma cacao
Thecc1EG008329 0.5kb downstream 0.5kb downstream 5952 true scaffold_2: 12663773-12669724 Theobroma cacao
Thecc1EG008329 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 12663773-12664272 Theobroma cacao
Thecc1EG008329 1.0kb upstream 1.0kb upstream 6452 true scaffold_2: 12664273-12670724 Theobroma cacao
Thecc1EG008329 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 12669725-12670724 Theobroma cacao
Thecc1EG008329 1.0kb downstream 1.0kb downstream 6452 true scaffold_2: 12663273-12669724 Theobroma cacao
Thecc1EG008329 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 12663273-12664272 Theobroma cacao
Thecc1EG008329 2.0kb upstream 2.0kb upstream 7452 true scaffold_2: 12664273-12671724 Theobroma cacao
Thecc1EG008329 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 12669725-12671724 Theobroma cacao
Thecc1EG008329 2.0kb downstream 2.0kb downstream 7452 true scaffold_2: 12662273-12669724 Theobroma cacao
Thecc1EG008329 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 12662273-12664272 Theobroma cacao
Thecc1EG008329 5.0kb upstream 5.0kb upstream 10452 true scaffold_2: 12664273-12674724 Theobroma cacao
Thecc1EG008329 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 12669725-12674724 Theobroma cacao
Thecc1EG008329 5.0kb downstream 5.0kb downstream 10452 true scaffold_2: 12659273-12669724 Theobroma cacao
Thecc1EG008329 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 12659273-12664272 Theobroma cacao
Thecc1EG008329 10.0kb upstream 10.0kb upstream 15452 true scaffold_2: 12664273-12679724 Theobroma cacao
Thecc1EG008329 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 12669725-12679724 Theobroma cacao
Thecc1EG008329 10.0kb downstream 10.0kb downstream 15452 true scaffold_2: 12654273-12669724 Theobroma cacao
Thecc1EG008329 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 12654273-12664272 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828502 5264 Brassicales-Malvales View MSA
124338437 5266 SBM View MSA
124239100 5268 Malvidae View MSA
124063587 5270 Rosid View MSA
123751424 5271 Pentapetalae View MSA
122793864 5272 Eudicot View MSA
122047180 5273 Angiosperm View MSA
121348773 5274 Embryophyte View MSA
123423981 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain