Gene : Thecc1EG002144 T. cacao v1.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  1749
Name:  ? Thecc1EG002144 Secondary Identifier:  ? PAC:27435093
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CAROTENOID-PWY Theobroma cacao pathologic  
Tcacao PWY-5943 Theobroma cacao pathologic  
Tcacao PWY-5947 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG002144 0.5kb upstream 0.5kb upstream 10322 true scaffold_1: 11959722-11970043 Theobroma cacao
Thecc1EG002144 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11969544-11970043 Theobroma cacao
Thecc1EG002144 0.5kb downstream 0.5kb downstream 10322 true scaffold_1: 11959222-11969543 Theobroma cacao
Thecc1EG002144 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11959222-11959721 Theobroma cacao
Thecc1EG002144 1.0kb upstream 1.0kb upstream 10822 true scaffold_1: 11959722-11970543 Theobroma cacao
Thecc1EG002144 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11969544-11970543 Theobroma cacao
Thecc1EG002144 1.0kb downstream 1.0kb downstream 10822 true scaffold_1: 11958722-11969543 Theobroma cacao
Thecc1EG002144 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11958722-11959721 Theobroma cacao
Thecc1EG002144 2.0kb upstream 2.0kb upstream 11822 true scaffold_1: 11959722-11971543 Theobroma cacao
Thecc1EG002144 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11969544-11971543 Theobroma cacao
Thecc1EG002144 2.0kb downstream 2.0kb downstream 11822 true scaffold_1: 11957722-11969543 Theobroma cacao
Thecc1EG002144 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11957722-11959721 Theobroma cacao
Thecc1EG002144 5.0kb upstream 5.0kb upstream 14822 true scaffold_1: 11959722-11974543 Theobroma cacao
Thecc1EG002144 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11969544-11974543 Theobroma cacao
Thecc1EG002144 5.0kb downstream 5.0kb downstream 14822 true scaffold_1: 11954722-11969543 Theobroma cacao
Thecc1EG002144 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11954722-11959721 Theobroma cacao
Thecc1EG002144 10.0kb upstream 10.0kb upstream 19822 true scaffold_1: 11959722-11979543 Theobroma cacao
Thecc1EG002144 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11969544-11979543 Theobroma cacao
Thecc1EG002144 10.0kb downstream 10.0kb downstream 19822 true scaffold_1: 11949722-11969543 Theobroma cacao
Thecc1EG002144 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11949722-11959721 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829995 5264 Brassicales-Malvales View MSA
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain