Gene : Thecc1EG000888 T. cacao v1.1
Defline:  (1 of 1) PTHR11540:SF27 - MALATE DEHYDROGENASE, GLYOXYSOMAL-RELATED Genomic Order:  779
Name:  ? Thecc1EG000888 Secondary Identifier:  ? PAC:27436961
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLUCONEO-PWY Theobroma cacao pathologic  
Tcacao GLYOXYLATE-BYPASS Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-561 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  
Tcacao PWY66-399 Theobroma cacao pathologic  
Tcacao PWY-7115 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000888 0.5kb upstream 0.5kb upstream 4356 true scaffold_1: 3985706-3990061 Theobroma cacao
Thecc1EG000888 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3985706-3986205 Theobroma cacao
Thecc1EG000888 0.5kb downstream 0.5kb downstream 4356 true scaffold_1: 3986206-3990561 Theobroma cacao
Thecc1EG000888 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3990062-3990561 Theobroma cacao
Thecc1EG000888 1.0kb upstream 1.0kb upstream 4856 true scaffold_1: 3985206-3990061 Theobroma cacao
Thecc1EG000888 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3985206-3986205 Theobroma cacao
Thecc1EG000888 1.0kb downstream 1.0kb downstream 4856 true scaffold_1: 3986206-3991061 Theobroma cacao
Thecc1EG000888 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3990062-3991061 Theobroma cacao
Thecc1EG000888 2.0kb upstream 2.0kb upstream 5856 true scaffold_1: 3984206-3990061 Theobroma cacao
Thecc1EG000888 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3984206-3986205 Theobroma cacao
Thecc1EG000888 2.0kb downstream 2.0kb downstream 5856 true scaffold_1: 3986206-3992061 Theobroma cacao
Thecc1EG000888 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3990062-3992061 Theobroma cacao
Thecc1EG000888 5.0kb upstream 5.0kb upstream 8856 true scaffold_1: 3981206-3990061 Theobroma cacao
Thecc1EG000888 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3981206-3986205 Theobroma cacao
Thecc1EG000888 5.0kb downstream 5.0kb downstream 8856 true scaffold_1: 3986206-3995061 Theobroma cacao
Thecc1EG000888 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3990062-3995061 Theobroma cacao
Thecc1EG000888 10.0kb upstream 10.0kb upstream 13856 true scaffold_1: 3976206-3990061 Theobroma cacao
Thecc1EG000888 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3976206-3986205 Theobroma cacao
Thecc1EG000888 10.0kb downstream 10.0kb downstream 13856 true scaffold_1: 3986206-4000061 Theobroma cacao
Thecc1EG000888 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3990062-4000061 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830380 5264 Brassicales-Malvales View MSA
124348581 5266 SBM View MSA
124236845 5268 Malvidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain