Gene : Phvul.008G249200 P. vulgaris v2.1
Defline:  (1 of 5) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) Genomic Order:  2503
Name:  ? Phvul.008G249200 Secondary Identifier:  ? PAC:37159464
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G249200 0.5kb upstream 0.5kb upstream 2310 true Chr08: 59832828-59835137 Phaseolus vulgaris
Phvul.008G249200 0.5kb upstream 0.5kb upstream 500 false Chr08: 59834638-59835137 Phaseolus vulgaris
Phvul.008G249200 0.5kb downstream 0.5kb downstream 2310 true Chr08: 59832328-59834637 Phaseolus vulgaris
Phvul.008G249200 0.5kb downstream 0.5kb downstream 500 false Chr08: 59832328-59832827 Phaseolus vulgaris
Phvul.008G249200 1.0kb upstream 1.0kb upstream 2810 true Chr08: 59832828-59835637 Phaseolus vulgaris
Phvul.008G249200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 59834638-59835637 Phaseolus vulgaris
Phvul.008G249200 1.0kb downstream 1.0kb downstream 2810 true Chr08: 59831828-59834637 Phaseolus vulgaris
Phvul.008G249200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 59831828-59832827 Phaseolus vulgaris
Phvul.008G249200 2.0kb upstream 2.0kb upstream 3810 true Chr08: 59832828-59836637 Phaseolus vulgaris
Phvul.008G249200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 59834638-59836637 Phaseolus vulgaris
Phvul.008G249200 2.0kb downstream 2.0kb downstream 3810 true Chr08: 59830828-59834637 Phaseolus vulgaris
Phvul.008G249200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 59830828-59832827 Phaseolus vulgaris
Phvul.008G249200 5.0kb upstream 5.0kb upstream 6810 true Chr08: 59832828-59839637 Phaseolus vulgaris
Phvul.008G249200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 59834638-59839637 Phaseolus vulgaris
Phvul.008G249200 5.0kb downstream 5.0kb downstream 6810 true Chr08: 59827828-59834637 Phaseolus vulgaris
Phvul.008G249200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 59827828-59832827 Phaseolus vulgaris
Phvul.008G249200 10.0kb upstream 10.0kb upstream 11810 true Chr08: 59832828-59844637 Phaseolus vulgaris
Phvul.008G249200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 59834638-59844637 Phaseolus vulgaris
Phvul.008G249200 10.0kb downstream 10.0kb downstream 11810 true Chr08: 59822828-59834637 Phaseolus vulgaris
Phvul.008G249200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 59822828-59832827 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.241181 0.0 0.971969 Low Low
cufflinks 0.544894 0.0 3.54863    
cufflinks 0.691234 0.0 4.34814   High
cufflinks 0.465486 0.0 2.3828 Low  
cufflinks 0.432062 0.0 2.12322 Low  
cufflinks 0.679265 0.0 4.35883   High
cufflinks 0.556948 0.0 3.84467 Low  
cufflinks 0.353728 0.0 1.37866 Low  
cufflinks 0.398518 0.0 2.87691 Low  
cufflinks 0.451871 0.0 3.18457    
cufflinks 0.427986 0.0 2.07696 Low  

0 Strain