Gene : Phvul.008G025900 P. vulgaris v2.1
Defline:  (1 of 19) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  265
Name:  ? Phvul.008G025900 Secondary Identifier:  ? PAC:37160959
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G025900 0.5kb upstream 0.5kb upstream 2931 true Chr08: 2141427-2144357 Phaseolus vulgaris
Phvul.008G025900 0.5kb upstream 0.5kb upstream 500 false Chr08: 2143858-2144357 Phaseolus vulgaris
Phvul.008G025900 0.5kb downstream 0.5kb downstream 2931 true Chr08: 2140927-2143857 Phaseolus vulgaris
Phvul.008G025900 0.5kb downstream 0.5kb downstream 500 false Chr08: 2140927-2141426 Phaseolus vulgaris
Phvul.008G025900 1.0kb upstream 1.0kb upstream 3431 true Chr08: 2141427-2144857 Phaseolus vulgaris
Phvul.008G025900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2143858-2144857 Phaseolus vulgaris
Phvul.008G025900 1.0kb downstream 1.0kb downstream 3431 true Chr08: 2140427-2143857 Phaseolus vulgaris
Phvul.008G025900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2140427-2141426 Phaseolus vulgaris
Phvul.008G025900 2.0kb upstream 2.0kb upstream 4431 true Chr08: 2141427-2145857 Phaseolus vulgaris
Phvul.008G025900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2143858-2145857 Phaseolus vulgaris
Phvul.008G025900 2.0kb downstream 2.0kb downstream 4431 true Chr08: 2139427-2143857 Phaseolus vulgaris
Phvul.008G025900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2139427-2141426 Phaseolus vulgaris
Phvul.008G025900 5.0kb upstream 5.0kb upstream 7431 true Chr08: 2141427-2148857 Phaseolus vulgaris
Phvul.008G025900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2143858-2148857 Phaseolus vulgaris
Phvul.008G025900 5.0kb downstream 5.0kb downstream 7431 true Chr08: 2136427-2143857 Phaseolus vulgaris
Phvul.008G025900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2136427-2141426 Phaseolus vulgaris
Phvul.008G025900 10.0kb upstream 10.0kb upstream 12431 true Chr08: 2141427-2153857 Phaseolus vulgaris
Phvul.008G025900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2143858-2153857 Phaseolus vulgaris
Phvul.008G025900 10.0kb downstream 10.0kb downstream 12431 true Chr08: 2131427-2143857 Phaseolus vulgaris
Phvul.008G025900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2131427-2141426 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
122311870 5265 Fabidae View MSA
124062033 5270 Rosid View MSA
123753025 5271 Pentapetalae View MSA
122794671 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.28085 0.0 4.16654    
cufflinks 3.0874 0.0 9.09629    
cufflinks 13.9243 0.0 36.1996   High
cufflinks 1.51029 0.0 4.8632    
cufflinks 1.55584 0.0 4.96955    
cufflinks 6.17275 0.0 16.9808   High
cufflinks 1.1623 0.0 3.8352    
cufflinks 1.27218 0.0 4.14376    
cufflinks 1.1847 0.0 3.90889    
cufflinks 1.3593 0.0 4.40057    
cufflinks 1.37111 0.0 4.44755    

0 Strain