Gene : Phvul.006G107000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23346:SF7 - TRANSLATIONAL ACTIVATOR GCN1 Genomic Order:  1062
Name:  ? Phvul.006G107000 Secondary Identifier:  ? PAC:37173538
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G107000 0.5kb upstream 0.5kb upstream 34440 true Chr06: 21628438-21662877 Phaseolus vulgaris
Phvul.006G107000 0.5kb upstream 0.5kb upstream 500 false Chr06: 21662378-21662877 Phaseolus vulgaris
Phvul.006G107000 0.5kb downstream 0.5kb downstream 34440 true Chr06: 21627938-21662377 Phaseolus vulgaris
Phvul.006G107000 0.5kb downstream 0.5kb downstream 500 false Chr06: 21627938-21628437 Phaseolus vulgaris
Phvul.006G107000 1.0kb upstream 1.0kb upstream 34940 true Chr06: 21628438-21663377 Phaseolus vulgaris
Phvul.006G107000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 21662378-21663377 Phaseolus vulgaris
Phvul.006G107000 1.0kb downstream 1.0kb downstream 34940 true Chr06: 21627438-21662377 Phaseolus vulgaris
Phvul.006G107000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 21627438-21628437 Phaseolus vulgaris
Phvul.006G107000 2.0kb upstream 2.0kb upstream 35940 true Chr06: 21628438-21664377 Phaseolus vulgaris
Phvul.006G107000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 21662378-21664377 Phaseolus vulgaris
Phvul.006G107000 2.0kb downstream 2.0kb downstream 35940 true Chr06: 21626438-21662377 Phaseolus vulgaris
Phvul.006G107000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 21626438-21628437 Phaseolus vulgaris
Phvul.006G107000 5.0kb upstream 5.0kb upstream 38940 true Chr06: 21628438-21667377 Phaseolus vulgaris
Phvul.006G107000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 21662378-21667377 Phaseolus vulgaris
Phvul.006G107000 5.0kb downstream 5.0kb downstream 38940 true Chr06: 21623438-21662377 Phaseolus vulgaris
Phvul.006G107000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 21623438-21628437 Phaseolus vulgaris
Phvul.006G107000 10.0kb upstream 10.0kb upstream 43940 true Chr06: 21628438-21672377 Phaseolus vulgaris
Phvul.006G107000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 21662378-21672377 Phaseolus vulgaris
Phvul.006G107000 10.0kb downstream 10.0kb downstream 43940 true Chr06: 21618438-21662377 Phaseolus vulgaris
Phvul.006G107000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 21618438-21628437 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303043 5265 Fabidae View MSA
124050351 5270 Rosid View MSA
123740065 5271 Pentapetalae View MSA
122789609 5272 Eudicot View MSA
122050896 5273 Angiosperm View MSA
121346458 5274 Embryophyte View MSA
123425740 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.35889 0.0 6.30384   Low
cufflinks 11.6397 0.0 30.8357    
cufflinks 17.4865 0.0 48.1025    
cufflinks 5.54448 0.0 14.3368   Low
cufflinks 12.5158 0.0 33.2312    
cufflinks 15.2475 0.0 41.2867    
cufflinks 17.1383 0.0 46.7869    
cufflinks 19.9816 0.0 55.6498    
cufflinks 18.0885 0.0 49.5029    
cufflinks 19.2798 0.0 53.432    
cufflinks 8.50772 0.0 22.1283    

0 Strain