Gene : Phvul.004G172600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10509//PTHR10509:SF29 - O-METHYLTRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1769
Name:  ? Phvul.004G172600 Secondary Identifier:  ? PAC:37162988
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G172600 0.5kb upstream 0.5kb upstream 3366 true Chr04: 47541508-47544873 Phaseolus vulgaris
Phvul.004G172600 0.5kb upstream 0.5kb upstream 500 false Chr04: 47541508-47542007 Phaseolus vulgaris
Phvul.004G172600 0.5kb downstream 0.5kb downstream 3366 true Chr04: 47542008-47545373 Phaseolus vulgaris
Phvul.004G172600 0.5kb downstream 0.5kb downstream 500 false Chr04: 47544874-47545373 Phaseolus vulgaris
Phvul.004G172600 1.0kb upstream 1.0kb upstream 3866 true Chr04: 47541008-47544873 Phaseolus vulgaris
Phvul.004G172600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47541008-47542007 Phaseolus vulgaris
Phvul.004G172600 1.0kb downstream 1.0kb downstream 3866 true Chr04: 47542008-47545873 Phaseolus vulgaris
Phvul.004G172600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47544874-47545873 Phaseolus vulgaris
Phvul.004G172600 2.0kb upstream 2.0kb upstream 4866 true Chr04: 47540008-47544873 Phaseolus vulgaris
Phvul.004G172600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47540008-47542007 Phaseolus vulgaris
Phvul.004G172600 2.0kb downstream 2.0kb downstream 4866 true Chr04: 47542008-47546873 Phaseolus vulgaris
Phvul.004G172600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47544874-47546873 Phaseolus vulgaris
Phvul.004G172600 5.0kb upstream 5.0kb upstream 7866 true Chr04: 47537008-47544873 Phaseolus vulgaris
Phvul.004G172600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47537008-47542007 Phaseolus vulgaris
Phvul.004G172600 5.0kb downstream 5.0kb downstream 7866 true Chr04: 47542008-47549873 Phaseolus vulgaris
Phvul.004G172600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47544874-47549873 Phaseolus vulgaris
Phvul.004G172600 10.0kb upstream 10.0kb upstream 12866 true Chr04: 47532008-47544873 Phaseolus vulgaris
Phvul.004G172600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47532008-47542007 Phaseolus vulgaris
Phvul.004G172600 10.0kb downstream 10.0kb downstream 12866 true Chr04: 47542008-47554873 Phaseolus vulgaris
Phvul.004G172600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47544874-47554873 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314949 5265 Fabidae View MSA
124070229 5270 Rosid View MSA
123751667 5271 Pentapetalae View MSA
122774127 5272 Eudicot View MSA
122050348 5273 Angiosperm View MSA
121311864 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.67161 0.0 16.0917    
cufflinks 2.35687 0.0 12.0585    
cufflinks 0.863118 0.0 4.03983   Low
cufflinks 1.87487 0.0 10.2329    
cufflinks 0.634218 0.0 2.47367   Low
cufflinks 1.72578 0.0 9.65878    
cufflinks 6.59085 0.0 25.8063   High
cufflinks 4.84159 0.0 16.368   High
cufflinks 3.09926 0.0 14.7266    
cufflinks 2.96202 0.0 11.4327    
cufflinks 0.789394 0.0 3.71902   Low

0 Strain