Gene : Phvul.004G137700 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1402
Name:  ? Phvul.004G137700 Secondary Identifier:  ? PAC:37163161
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G137700 0.5kb upstream 0.5kb upstream 3117 true Chr04: 43713363-43716479 Phaseolus vulgaris
Phvul.004G137700 0.5kb upstream 0.5kb upstream 500 false Chr04: 43713363-43713862 Phaseolus vulgaris
Phvul.004G137700 0.5kb downstream 0.5kb downstream 3117 true Chr04: 43713863-43716979 Phaseolus vulgaris
Phvul.004G137700 0.5kb downstream 0.5kb downstream 500 false Chr04: 43716480-43716979 Phaseolus vulgaris
Phvul.004G137700 1.0kb upstream 1.0kb upstream 3617 true Chr04: 43712863-43716479 Phaseolus vulgaris
Phvul.004G137700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 43712863-43713862 Phaseolus vulgaris
Phvul.004G137700 1.0kb downstream 1.0kb downstream 3617 true Chr04: 43713863-43717479 Phaseolus vulgaris
Phvul.004G137700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 43716480-43717479 Phaseolus vulgaris
Phvul.004G137700 2.0kb upstream 2.0kb upstream 4617 true Chr04: 43711863-43716479 Phaseolus vulgaris
Phvul.004G137700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 43711863-43713862 Phaseolus vulgaris
Phvul.004G137700 2.0kb downstream 2.0kb downstream 4617 true Chr04: 43713863-43718479 Phaseolus vulgaris
Phvul.004G137700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 43716480-43718479 Phaseolus vulgaris
Phvul.004G137700 5.0kb upstream 5.0kb upstream 7617 true Chr04: 43708863-43716479 Phaseolus vulgaris
Phvul.004G137700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 43708863-43713862 Phaseolus vulgaris
Phvul.004G137700 5.0kb downstream 5.0kb downstream 7617 true Chr04: 43713863-43721479 Phaseolus vulgaris
Phvul.004G137700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 43716480-43721479 Phaseolus vulgaris
Phvul.004G137700 10.0kb upstream 10.0kb upstream 12617 true Chr04: 43703863-43716479 Phaseolus vulgaris
Phvul.004G137700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 43703863-43713862 Phaseolus vulgaris
Phvul.004G137700 10.0kb downstream 10.0kb downstream 12617 true Chr04: 43713863-43726479 Phaseolus vulgaris
Phvul.004G137700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 43716480-43726479 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029261 5273 Angiosperm View MSA
122315729 5265 Fabidae View MSA
124069895 5270 Rosid View MSA
123742490 5271 Pentapetalae View MSA
122795745 5272 Eudicot View MSA
121298616 5274 Embryophyte View MSA
123336578 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.488989 0.0 1.76572    
cufflinks 0.688269 0.0 2.40692   High
cufflinks 0.255531 0.0 0.974507 Low Low
cufflinks 0.792212 0.0 2.77021   High
cufflinks 0.411512 0.0 1.51588 Low  
cufflinks 0.42458 0.0 1.5546 Low  
cufflinks 0.320582 0.0 1.20315 Low  
cufflinks 0.588592 0.0 2.08837    
cufflinks 0.171901 0.0 0.680286 Low Low
cufflinks 0.470654 0.0 1.70868    
cufflinks 0.598947 0.0 2.13073    

0 Strain