Gene : Phvul.003G279800 P. vulgaris v2.1
Defline:  (1 of 3) KOG4629 - Predicted mechanosensitive ion channel Genomic Order:  2844
Name:  ? Phvul.003G279800 Secondary Identifier:  ? PAC:37146578
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G279800 0.5kb upstream 0.5kb upstream 7631 true Chr03: 51701523-51709153 Phaseolus vulgaris
Phvul.003G279800 0.5kb upstream 0.5kb upstream 500 false Chr03: 51708654-51709153 Phaseolus vulgaris
Phvul.003G279800 0.5kb downstream 0.5kb downstream 7631 true Chr03: 51701023-51708653 Phaseolus vulgaris
Phvul.003G279800 0.5kb downstream 0.5kb downstream 500 false Chr03: 51701023-51701522 Phaseolus vulgaris
Phvul.003G279800 1.0kb upstream 1.0kb upstream 8131 true Chr03: 51701523-51709653 Phaseolus vulgaris
Phvul.003G279800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 51708654-51709653 Phaseolus vulgaris
Phvul.003G279800 1.0kb downstream 1.0kb downstream 8131 true Chr03: 51700523-51708653 Phaseolus vulgaris
Phvul.003G279800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 51700523-51701522 Phaseolus vulgaris
Phvul.003G279800 2.0kb upstream 2.0kb upstream 9131 true Chr03: 51701523-51710653 Phaseolus vulgaris
Phvul.003G279800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 51708654-51710653 Phaseolus vulgaris
Phvul.003G279800 2.0kb downstream 2.0kb downstream 9131 true Chr03: 51699523-51708653 Phaseolus vulgaris
Phvul.003G279800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 51699523-51701522 Phaseolus vulgaris
Phvul.003G279800 5.0kb upstream 5.0kb upstream 12131 true Chr03: 51701523-51713653 Phaseolus vulgaris
Phvul.003G279800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 51708654-51713653 Phaseolus vulgaris
Phvul.003G279800 5.0kb downstream 5.0kb downstream 12131 true Chr03: 51696523-51708653 Phaseolus vulgaris
Phvul.003G279800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 51696523-51701522 Phaseolus vulgaris
Phvul.003G279800 10.0kb upstream 10.0kb upstream 17131 true Chr03: 51701523-51718653 Phaseolus vulgaris
Phvul.003G279800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 51708654-51718653 Phaseolus vulgaris
Phvul.003G279800 10.0kb downstream 10.0kb downstream 17131 true Chr03: 51691523-51708653 Phaseolus vulgaris
Phvul.003G279800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 51691523-51701522 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041489 5273 Angiosperm View MSA
122307738 5265 Fabidae View MSA
124069655 5270 Rosid View MSA
123753249 5271 Pentapetalae View MSA
122794299 5272 Eudicot View MSA
121309858 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.310681 0.0 1.14592 Low Low
cufflinks 2.85395 0.0 8.27666    
cufflinks 3.58568 0.0 10.1516    
cufflinks 0.983416 0.0 3.24478    
cufflinks 1.02262 0.0 3.35473    
cufflinks 11.2097 0.0 29.1611   High
cufflinks 2.51859 0.0 7.38546    
cufflinks 1.38866 0.0 4.36134    
cufflinks 1.23653 0.0 3.93521    
cufflinks 0.195588 0.0 0.750449 Low Low
cufflinks 2.19082 0.0 6.56223    

0 Strain