Gene : Phvul.003G142500 P. vulgaris v2.1
Defline:  (1 of 30) PF02485 - Core-2/I-Branching enzyme (Branch) Genomic Order:  1396
Name:  ? Phvul.003G142500 Secondary Identifier:  ? PAC:37145141
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G142500 0.5kb upstream 0.5kb upstream 6005 true Chr03: 33857086-33863090 Phaseolus vulgaris
Phvul.003G142500 0.5kb upstream 0.5kb upstream 500 false Chr03: 33862591-33863090 Phaseolus vulgaris
Phvul.003G142500 0.5kb downstream 0.5kb downstream 6005 true Chr03: 33856586-33862590 Phaseolus vulgaris
Phvul.003G142500 0.5kb downstream 0.5kb downstream 500 false Chr03: 33856586-33857085 Phaseolus vulgaris
Phvul.003G142500 1.0kb upstream 1.0kb upstream 6505 true Chr03: 33857086-33863590 Phaseolus vulgaris
Phvul.003G142500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 33862591-33863590 Phaseolus vulgaris
Phvul.003G142500 1.0kb downstream 1.0kb downstream 6505 true Chr03: 33856086-33862590 Phaseolus vulgaris
Phvul.003G142500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 33856086-33857085 Phaseolus vulgaris
Phvul.003G142500 2.0kb upstream 2.0kb upstream 7505 true Chr03: 33857086-33864590 Phaseolus vulgaris
Phvul.003G142500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 33862591-33864590 Phaseolus vulgaris
Phvul.003G142500 2.0kb downstream 2.0kb downstream 7505 true Chr03: 33855086-33862590 Phaseolus vulgaris
Phvul.003G142500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 33855086-33857085 Phaseolus vulgaris
Phvul.003G142500 5.0kb upstream 5.0kb upstream 10505 true Chr03: 33857086-33867590 Phaseolus vulgaris
Phvul.003G142500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 33862591-33867590 Phaseolus vulgaris
Phvul.003G142500 5.0kb downstream 5.0kb downstream 10505 true Chr03: 33852086-33862590 Phaseolus vulgaris
Phvul.003G142500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 33852086-33857085 Phaseolus vulgaris
Phvul.003G142500 10.0kb upstream 10.0kb upstream 15505 true Chr03: 33857086-33872590 Phaseolus vulgaris
Phvul.003G142500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 33862591-33872590 Phaseolus vulgaris
Phvul.003G142500 10.0kb downstream 10.0kb downstream 15505 true Chr03: 33847086-33862590 Phaseolus vulgaris
Phvul.003G142500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 33847086-33857085 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312018 5265 Fabidae View MSA
124038885 5270 Rosid View MSA
123748259 5271 Pentapetalae View MSA
122772522 5272 Eudicot View MSA
122051448 5273 Angiosperm View MSA
121351490 5274 Embryophyte View MSA
123428085 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.31034 0.0 7.44962   Low
cufflinks 6.35668 0.0 18.2706    
cufflinks 17.903 0.0 47.129    
cufflinks 1.96541 0.0 6.50285   Low
cufflinks 10.5369 0.0 29.0453    
cufflinks 17.5933 0.0 46.346    
cufflinks 15.4738 0.0 41.1445    
cufflinks 16.6575 0.0 43.9256    
cufflinks 12.1957 0.0 33.0811    
cufflinks 19.6565 0.0 51.5079    
cufflinks 5.72342 0.0 16.724    

0 Strain