Gene : Phvul.003G034900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31917:SF9 - AGENET DOMAIN-CONTAINING PROTEIN / BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN Genomic Order:  355
Name:  ? Phvul.003G034900 Secondary Identifier:  ? PAC:37146984
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G034900 0.5kb upstream 0.5kb upstream 4038 true Chr03: 3585019-3589056 Phaseolus vulgaris
Phvul.003G034900 0.5kb upstream 0.5kb upstream 500 false Chr03: 3588557-3589056 Phaseolus vulgaris
Phvul.003G034900 0.5kb downstream 0.5kb downstream 4038 true Chr03: 3584519-3588556 Phaseolus vulgaris
Phvul.003G034900 0.5kb downstream 0.5kb downstream 500 false Chr03: 3584519-3585018 Phaseolus vulgaris
Phvul.003G034900 1.0kb upstream 1.0kb upstream 4538 true Chr03: 3585019-3589556 Phaseolus vulgaris
Phvul.003G034900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3588557-3589556 Phaseolus vulgaris
Phvul.003G034900 1.0kb downstream 1.0kb downstream 4538 true Chr03: 3584019-3588556 Phaseolus vulgaris
Phvul.003G034900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3584019-3585018 Phaseolus vulgaris
Phvul.003G034900 2.0kb upstream 2.0kb upstream 5538 true Chr03: 3585019-3590556 Phaseolus vulgaris
Phvul.003G034900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3588557-3590556 Phaseolus vulgaris
Phvul.003G034900 2.0kb downstream 2.0kb downstream 5538 true Chr03: 3583019-3588556 Phaseolus vulgaris
Phvul.003G034900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3583019-3585018 Phaseolus vulgaris
Phvul.003G034900 5.0kb upstream 5.0kb upstream 8538 true Chr03: 3585019-3593556 Phaseolus vulgaris
Phvul.003G034900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3588557-3593556 Phaseolus vulgaris
Phvul.003G034900 5.0kb downstream 5.0kb downstream 8538 true Chr03: 3580019-3588556 Phaseolus vulgaris
Phvul.003G034900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3580019-3585018 Phaseolus vulgaris
Phvul.003G034900 10.0kb upstream 10.0kb upstream 13538 true Chr03: 3585019-3598556 Phaseolus vulgaris
Phvul.003G034900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3588557-3598556 Phaseolus vulgaris
Phvul.003G034900 10.0kb downstream 10.0kb downstream 13538 true Chr03: 3575019-3588556 Phaseolus vulgaris
Phvul.003G034900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3575019-3585018 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314264 5265 Fabidae View MSA
124073290 5270 Rosid View MSA
123738159 5271 Pentapetalae View MSA
122792230 5272 Eudicot View MSA
122049413 5273 Angiosperm View MSA
121349027 5274 Embryophyte View MSA
123381130 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.4644 0.0 29.804   Low
cufflinks 19.7378 0.0 51.0984    
cufflinks 43.5582 0.0 117.666 High High
cufflinks 13.8918 0.0 36.0112   Low
cufflinks 29.2773 0.0 76.6762    
cufflinks 24.1831 0.0 62.9341    
cufflinks 32.3836 0.0 85.6731 High  
cufflinks 32.6098 0.0 86.4084 High  
cufflinks 25.9243 0.0 67.6701    
cufflinks 34.1033 0.0 90.4417    
cufflinks 23.4466 0.0 60.9274    

0 Strain