Gene : Solyc04g080340.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) 4.1.3.44 - tRNA 4-demethylwyosine synthase (AdoMet-dependent) Description:  Wyosine base formation domain protein (AHRD V1 *--- D3TCK2_ACIB4); contains Interpro domain(s) IPR013917 Wyosine base formation
Genomic Order:  2476 Name:  ? Solyc04g080340.2
Secondary Identifier:  ? PAC:36142964
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7286 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g080340.2 0.5kb upstream 0.5kb upstream 5277 true SL2.50ch04: 64555149-64560425 Solanum lycopersicum
Solyc04g080340.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 64559926-64560425 Solanum lycopersicum
Solyc04g080340.2 0.5kb downstream 0.5kb downstream 5277 true SL2.50ch04: 64554649-64559925 Solanum lycopersicum
Solyc04g080340.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 64554649-64555148 Solanum lycopersicum
Solyc04g080340.2 1.0kb upstream 1.0kb upstream 5777 true SL2.50ch04: 64555149-64560925 Solanum lycopersicum
Solyc04g080340.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 64559926-64560925 Solanum lycopersicum
Solyc04g080340.2 1.0kb downstream 1.0kb downstream 5777 true SL2.50ch04: 64554149-64559925 Solanum lycopersicum
Solyc04g080340.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 64554149-64555148 Solanum lycopersicum
Solyc04g080340.2 2.0kb upstream 2.0kb upstream 6777 true SL2.50ch04: 64555149-64561925 Solanum lycopersicum
Solyc04g080340.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 64559926-64561925 Solanum lycopersicum
Solyc04g080340.2 2.0kb downstream 2.0kb downstream 6777 true SL2.50ch04: 64553149-64559925 Solanum lycopersicum
Solyc04g080340.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 64553149-64555148 Solanum lycopersicum
Solyc04g080340.2 5.0kb upstream 5.0kb upstream 9777 true SL2.50ch04: 64555149-64564925 Solanum lycopersicum
Solyc04g080340.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 64559926-64564925 Solanum lycopersicum
Solyc04g080340.2 5.0kb downstream 5.0kb downstream 9777 true SL2.50ch04: 64550149-64559925 Solanum lycopersicum
Solyc04g080340.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 64550149-64555148 Solanum lycopersicum
Solyc04g080340.2 10.0kb upstream 10.0kb upstream 14777 true SL2.50ch04: 64555149-64569925 Solanum lycopersicum
Solyc04g080340.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 64559926-64569925 Solanum lycopersicum
Solyc04g080340.2 10.0kb downstream 10.0kb downstream 14777 true SL2.50ch04: 64545149-64559925 Solanum lycopersicum
Solyc04g080340.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 64545149-64555148 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121468951 5263 Asterids View MSA
123737792 5271 Pentapetalae View MSA
122788596 5272 Eudicot View MSA
122045303 5273 Angiosperm View MSA
121343824 5274 Embryophyte View MSA
123426537 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain