Gene : Tp57577_TGAC_v2_gene32335 T. pratense v2
Defline:  (1 of 1) PTHR11777:SF18 - ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  13
Name:  ? Tp57577_TGAC_v2_gene32335 Secondary Identifier:  ? PAC:35992008
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense TRNA-CHARGING-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene32335 0.5kb upstream 0.5kb upstream 13696 true Tp57577_TGAC_v2_scaf_198: 60176-73871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_198: 60176-60675 Trifolium pratense
Tp57577_TGAC_v2_gene32335 0.5kb downstream 0.5kb downstream 13696 true Tp57577_TGAC_v2_scaf_198: 60676-74371 Trifolium pratense
Tp57577_TGAC_v2_gene32335 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_198: 73872-74371 Trifolium pratense
Tp57577_TGAC_v2_gene32335 1.0kb upstream 1.0kb upstream 14196 true Tp57577_TGAC_v2_scaf_198: 59676-73871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_198: 59676-60675 Trifolium pratense
Tp57577_TGAC_v2_gene32335 1.0kb downstream 1.0kb downstream 14196 true Tp57577_TGAC_v2_scaf_198: 60676-74871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_198: 73872-74871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 2.0kb upstream 2.0kb upstream 15196 true Tp57577_TGAC_v2_scaf_198: 58676-73871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_198: 58676-60675 Trifolium pratense
Tp57577_TGAC_v2_gene32335 2.0kb downstream 2.0kb downstream 15196 true Tp57577_TGAC_v2_scaf_198: 60676-75871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_198: 73872-75871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 5.0kb upstream 5.0kb upstream 18196 true Tp57577_TGAC_v2_scaf_198: 55676-73871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_198: 55676-60675 Trifolium pratense
Tp57577_TGAC_v2_gene32335 5.0kb downstream 5.0kb downstream 18196 true Tp57577_TGAC_v2_scaf_198: 60676-78871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_198: 73872-78871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 10.0kb upstream 10.0kb upstream 23196 true Tp57577_TGAC_v2_scaf_198: 50676-73871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_198: 50676-60675 Trifolium pratense
Tp57577_TGAC_v2_gene32335 10.0kb downstream 10.0kb downstream 23196 true Tp57577_TGAC_v2_scaf_198: 60676-83871 Trifolium pratense
Tp57577_TGAC_v2_gene32335 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_198: 73872-83871 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307158 5265 Fabidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain