Gene : Tp57577_TGAC_v2_gene9309 T. pratense v2
Defline:  (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) Genomic Order:  1972
Name:  ? Tp57577_TGAC_v2_gene9309 Secondary Identifier:  ? PAC:35974141
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CAROTENOID-PWY Trifolium pratense pathologic  
Tpratense PWY-5943 Trifolium pratense pathologic  
Tpratense PWY-5947 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene9309 0.5kb upstream 0.5kb upstream 2784 true Tp57577_TGAC_v2_LG6: 16902685-16905468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG6: 16902685-16903184 Trifolium pratense
Tp57577_TGAC_v2_gene9309 0.5kb downstream 0.5kb downstream 2784 true Tp57577_TGAC_v2_LG6: 16903185-16905968 Trifolium pratense
Tp57577_TGAC_v2_gene9309 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG6: 16905469-16905968 Trifolium pratense
Tp57577_TGAC_v2_gene9309 1.0kb upstream 1.0kb upstream 3284 true Tp57577_TGAC_v2_LG6: 16902185-16905468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG6: 16902185-16903184 Trifolium pratense
Tp57577_TGAC_v2_gene9309 1.0kb downstream 1.0kb downstream 3284 true Tp57577_TGAC_v2_LG6: 16903185-16906468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG6: 16905469-16906468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 2.0kb upstream 2.0kb upstream 4284 true Tp57577_TGAC_v2_LG6: 16901185-16905468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG6: 16901185-16903184 Trifolium pratense
Tp57577_TGAC_v2_gene9309 2.0kb downstream 2.0kb downstream 4284 true Tp57577_TGAC_v2_LG6: 16903185-16907468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG6: 16905469-16907468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 5.0kb upstream 5.0kb upstream 7284 true Tp57577_TGAC_v2_LG6: 16898185-16905468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG6: 16898185-16903184 Trifolium pratense
Tp57577_TGAC_v2_gene9309 5.0kb downstream 5.0kb downstream 7284 true Tp57577_TGAC_v2_LG6: 16903185-16910468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG6: 16905469-16910468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 10.0kb upstream 10.0kb upstream 12284 true Tp57577_TGAC_v2_LG6: 16893185-16905468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG6: 16893185-16903184 Trifolium pratense
Tp57577_TGAC_v2_gene9309 10.0kb downstream 10.0kb downstream 12284 true Tp57577_TGAC_v2_LG6: 16903185-16915468 Trifolium pratense
Tp57577_TGAC_v2_gene9309 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG6: 16905469-16915468 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303951 5265 Fabidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain