Gene : Tp57577_TGAC_v2_gene28287 T. pratense v2
Defline:  (1 of 2) K00606 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) Genomic Order:  268
Name:  ? Tp57577_TGAC_v2_gene28287 Secondary Identifier:  ? PAC:35983684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PANTO-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene28287 0.5kb upstream 0.5kb upstream 3177 true Tp57577_TGAC_v2_LG5: 2769068-2772244 Trifolium pratense
Tp57577_TGAC_v2_gene28287 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG5: 2771745-2772244 Trifolium pratense
Tp57577_TGAC_v2_gene28287 0.5kb downstream 0.5kb downstream 3177 true Tp57577_TGAC_v2_LG5: 2768568-2771744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG5: 2768568-2769067 Trifolium pratense
Tp57577_TGAC_v2_gene28287 1.0kb upstream 1.0kb upstream 3677 true Tp57577_TGAC_v2_LG5: 2769068-2772744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG5: 2771745-2772744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 1.0kb downstream 1.0kb downstream 3677 true Tp57577_TGAC_v2_LG5: 2768068-2771744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG5: 2768068-2769067 Trifolium pratense
Tp57577_TGAC_v2_gene28287 2.0kb upstream 2.0kb upstream 4677 true Tp57577_TGAC_v2_LG5: 2769068-2773744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG5: 2771745-2773744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 2.0kb downstream 2.0kb downstream 4677 true Tp57577_TGAC_v2_LG5: 2767068-2771744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG5: 2767068-2769067 Trifolium pratense
Tp57577_TGAC_v2_gene28287 5.0kb upstream 5.0kb upstream 7677 true Tp57577_TGAC_v2_LG5: 2769068-2776744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG5: 2771745-2776744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 5.0kb downstream 5.0kb downstream 7677 true Tp57577_TGAC_v2_LG5: 2764068-2771744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG5: 2764068-2769067 Trifolium pratense
Tp57577_TGAC_v2_gene28287 10.0kb upstream 10.0kb upstream 12677 true Tp57577_TGAC_v2_LG5: 2769068-2781744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG5: 2771745-2781744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 10.0kb downstream 10.0kb downstream 12677 true Tp57577_TGAC_v2_LG5: 2759068-2771744 Trifolium pratense
Tp57577_TGAC_v2_gene28287 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG5: 2759068-2769067 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301613 5265 Fabidae View MSA
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain