Gene : AL1G25200 A. lyrata v2.1

Defline:  (1 of 3) K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Genomic Order:  1447
Name:  ? AL1G25200 Secondary Identifier:  ? PAC:35933724

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ANAEROFRUCAT-PWY Arabidopsis lyrata pathologic  
Alyrata ANAGLYCOLYSIS-PWY Arabidopsis lyrata pathologic  
Alyrata GLUCONEO-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-1042 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY66-399 Arabidopsis lyrata pathologic  
Alyrata SUCSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G25200 0.5kb upstream 0.5kb upstream 2845   true scaffold_1: 5638660-5641504 Arabidopsis lyrata
AL1G25200 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 5641005-5641504 Arabidopsis lyrata
AL1G25200 0.5kb downstream 0.5kb downstream 2845   true scaffold_1: 5638160-5641004 Arabidopsis lyrata
AL1G25200 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 5638160-5638659 Arabidopsis lyrata
AL1G25200 1.0kb upstream 1.0kb upstream 3345   true scaffold_1: 5638660-5642004 Arabidopsis lyrata
AL1G25200 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 5641005-5642004 Arabidopsis lyrata
AL1G25200 1.0kb downstream 1.0kb downstream 3345   true scaffold_1: 5637660-5641004 Arabidopsis lyrata
AL1G25200 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 5637660-5638659 Arabidopsis lyrata
AL1G25200 2.0kb upstream 2.0kb upstream 4345   true scaffold_1: 5638660-5643004 Arabidopsis lyrata
AL1G25200 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 5641005-5643004 Arabidopsis lyrata
AL1G25200 2.0kb downstream 2.0kb downstream 4345   true scaffold_1: 5636660-5641004 Arabidopsis lyrata
AL1G25200 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 5636660-5638659 Arabidopsis lyrata
AL1G25200 5.0kb upstream 5.0kb upstream 7345   true scaffold_1: 5638660-5646004 Arabidopsis lyrata
AL1G25200 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 5641005-5646004 Arabidopsis lyrata
AL1G25200 5.0kb downstream 5.0kb downstream 7345   true scaffold_1: 5633660-5641004 Arabidopsis lyrata
AL1G25200 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 5633660-5638659 Arabidopsis lyrata
AL1G25200 10.0kb upstream 10.0kb upstream 12345   true scaffold_1: 5638660-5651004 Arabidopsis lyrata
AL1G25200 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 5641005-5651004 Arabidopsis lyrata
AL1G25200 10.0kb downstream 10.0kb downstream 12345   true scaffold_1: 5628660-5641004 Arabidopsis lyrata
AL1G25200 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 5628660-5638659 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381041 5261 Brassicaceae View MSA
123840158 5264 Brassicales-Malvales View MSA
124346732 5266 SBM View MSA
124250703 5268 Malvidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain