Gene : AL5G43890 A. lyrata v2.1

Defline:  (1 of 1) K00606 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) Genomic Order:  3047
Name:  ? AL5G43890 Secondary Identifier:  ? PAC:35919642

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PANTO-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G43890 0.5kb upstream 0.5kb upstream 2328   true scaffold_5: 20321709-20324036 Arabidopsis lyrata
AL5G43890 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 20323537-20324036 Arabidopsis lyrata
AL5G43890 0.5kb downstream 0.5kb downstream 2328   true scaffold_5: 20321209-20323536 Arabidopsis lyrata
AL5G43890 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 20321209-20321708 Arabidopsis lyrata
AL5G43890 1.0kb upstream 1.0kb upstream 2828   true scaffold_5: 20321709-20324536 Arabidopsis lyrata
AL5G43890 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 20323537-20324536 Arabidopsis lyrata
AL5G43890 1.0kb downstream 1.0kb downstream 2828   true scaffold_5: 20320709-20323536 Arabidopsis lyrata
AL5G43890 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 20320709-20321708 Arabidopsis lyrata
AL5G43890 2.0kb upstream 2.0kb upstream 3828   true scaffold_5: 20321709-20325536 Arabidopsis lyrata
AL5G43890 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 20323537-20325536 Arabidopsis lyrata
AL5G43890 2.0kb downstream 2.0kb downstream 3828   true scaffold_5: 20319709-20323536 Arabidopsis lyrata
AL5G43890 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 20319709-20321708 Arabidopsis lyrata
AL5G43890 5.0kb upstream 5.0kb upstream 6828   true scaffold_5: 20321709-20328536 Arabidopsis lyrata
AL5G43890 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 20323537-20328536 Arabidopsis lyrata
AL5G43890 5.0kb downstream 5.0kb downstream 6828   true scaffold_5: 20316709-20323536 Arabidopsis lyrata
AL5G43890 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 20316709-20321708 Arabidopsis lyrata
AL5G43890 10.0kb upstream 10.0kb upstream 11828   true scaffold_5: 20321709-20333536 Arabidopsis lyrata
AL5G43890 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 20323537-20333536 Arabidopsis lyrata
AL5G43890 10.0kb downstream 10.0kb downstream 11828   true scaffold_5: 20311709-20323536 Arabidopsis lyrata
AL5G43890 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 20311709-20321708 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368160 5261 Brassicaceae View MSA
123840931 5264 Brassicales-Malvales View MSA
124337427 5266 SBM View MSA
124240313 5268 Malvidae View MSA
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain