Gene : AL3G45540 A. lyrata v2.1

Defline:  (1 of 12) K11000 - callose synthase [EC:2.4.1.-] Glc b1-3 Glc (CALS) Genomic Order:  3316
Name:  ? AL3G45540 Secondary Identifier:  ? PAC:35941267

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6773 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G45540 0.5kb upstream 0.5kb upstream 12572   true scaffold_3: 18431021-18443592 Arabidopsis lyrata
AL3G45540 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 18431021-18431520 Arabidopsis lyrata
AL3G45540 0.5kb downstream 0.5kb downstream 12572   true scaffold_3: 18431521-18444092 Arabidopsis lyrata
AL3G45540 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 18443593-18444092 Arabidopsis lyrata
AL3G45540 1.0kb upstream 1.0kb upstream 13072   true scaffold_3: 18430521-18443592 Arabidopsis lyrata
AL3G45540 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 18430521-18431520 Arabidopsis lyrata
AL3G45540 1.0kb downstream 1.0kb downstream 13072   true scaffold_3: 18431521-18444592 Arabidopsis lyrata
AL3G45540 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 18443593-18444592 Arabidopsis lyrata
AL3G45540 2.0kb upstream 2.0kb upstream 14072   true scaffold_3: 18429521-18443592 Arabidopsis lyrata
AL3G45540 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 18429521-18431520 Arabidopsis lyrata
AL3G45540 2.0kb downstream 2.0kb downstream 14072   true scaffold_3: 18431521-18445592 Arabidopsis lyrata
AL3G45540 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 18443593-18445592 Arabidopsis lyrata
AL3G45540 5.0kb upstream 5.0kb upstream 17072   true scaffold_3: 18426521-18443592 Arabidopsis lyrata
AL3G45540 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 18426521-18431520 Arabidopsis lyrata
AL3G45540 5.0kb downstream 5.0kb downstream 17072   true scaffold_3: 18431521-18448592 Arabidopsis lyrata
AL3G45540 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 18443593-18448592 Arabidopsis lyrata
AL3G45540 10.0kb upstream 10.0kb upstream 22072   true scaffold_3: 18421521-18443592 Arabidopsis lyrata
AL3G45540 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 18421521-18431520 Arabidopsis lyrata
AL3G45540 10.0kb downstream 10.0kb downstream 22072   true scaffold_3: 18431521-18453592 Arabidopsis lyrata
AL3G45540 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 18443593-18453592 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361913 5261 Brassicaceae View MSA
123828093 5264 Brassicales-Malvales View MSA
124346230 5266 SBM View MSA
124240742 5268 Malvidae View MSA
124065172 5270 Rosid View MSA
123736428 5271 Pentapetalae View MSA
122796898 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain