Gene : AL3G42020 A. lyrata v2.1

Defline:  (1 of 1) PTHR24096:SF219 - LONG CHAIN ACYL-COA SYNTHETASE 8 Genomic Order:  3027
Name:  ? AL3G42020 Secondary Identifier:  ? PAC:35941579

Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1121 Arabidopsis lyrata pathologic  
Alyrata PWY-321 Arabidopsis lyrata pathologic  
Alyrata PWY-5136 Arabidopsis lyrata pathologic  
Alyrata PWY-5143 Arabidopsis lyrata pathologic  
Alyrata PWY-5147 Arabidopsis lyrata pathologic  
Alyrata PWY-5156 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5885 Arabidopsis lyrata pathologic  
Alyrata PWY-5971 Arabidopsis lyrata pathologic  
Alyrata PWY-5989 Arabidopsis lyrata pathologic  
Alyrata PWY66-389 Arabidopsis lyrata pathologic  
Alyrata PWY-6733 Arabidopsis lyrata pathologic  
Alyrata PWY-6803 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G42020 0.5kb upstream 0.5kb upstream 4158   true scaffold_3: 13330575-13334732 Arabidopsis lyrata
AL3G42020 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 13330575-13331074 Arabidopsis lyrata
AL3G42020 0.5kb downstream 0.5kb downstream 4158   true scaffold_3: 13331075-13335232 Arabidopsis lyrata
AL3G42020 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 13334733-13335232 Arabidopsis lyrata
AL3G42020 1.0kb upstream 1.0kb upstream 4658   true scaffold_3: 13330075-13334732 Arabidopsis lyrata
AL3G42020 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 13330075-13331074 Arabidopsis lyrata
AL3G42020 1.0kb downstream 1.0kb downstream 4658   true scaffold_3: 13331075-13335732 Arabidopsis lyrata
AL3G42020 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 13334733-13335732 Arabidopsis lyrata
AL3G42020 2.0kb upstream 2.0kb upstream 5658   true scaffold_3: 13329075-13334732 Arabidopsis lyrata
AL3G42020 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 13329075-13331074 Arabidopsis lyrata
AL3G42020 2.0kb downstream 2.0kb downstream 5658   true scaffold_3: 13331075-13336732 Arabidopsis lyrata
AL3G42020 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 13334733-13336732 Arabidopsis lyrata
AL3G42020 5.0kb upstream 5.0kb upstream 8658   true scaffold_3: 13326075-13334732 Arabidopsis lyrata
AL3G42020 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 13326075-13331074 Arabidopsis lyrata
AL3G42020 5.0kb downstream 5.0kb downstream 8658   true scaffold_3: 13331075-13339732 Arabidopsis lyrata
AL3G42020 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 13334733-13339732 Arabidopsis lyrata
AL3G42020 10.0kb upstream 10.0kb upstream 13658   true scaffold_3: 13321075-13334732 Arabidopsis lyrata
AL3G42020 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 13321075-13331074 Arabidopsis lyrata
AL3G42020 10.0kb downstream 10.0kb downstream 13658   true scaffold_3: 13331075-13344732 Arabidopsis lyrata
AL3G42020 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 13334733-13344732 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362649 5261 Brassicaceae View MSA
123830994 5264 Brassicales-Malvales View MSA
124343221 5266 SBM View MSA
124243031 5268 Malvidae View MSA
124066498 5270 Rosid View MSA
123736490 5271 Pentapetalae View MSA
122788185 5272 Eudicot View MSA
122046932 5273 Angiosperm View MSA
121348478 5274 Embryophyte View MSA
123380877 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain