Protein Domain : IPR016492

Type:  Family Name:  Transcription elongation factor, TFIIS-related
Description:  This entry represents transcription elongation factors of the IIS type. It also includes TFIIS-related proteins. TFIIS is a component of RNA polymerase II preinitiation complexes, and is required for preinitiation complex assembly and stability []. The association of TFIIS with a promoter depends on functional preinitiation complex components including Mediator and the SAGA complex []. TFIIS is composed of three domains: domain 1 forms a 4-helical bundle that appears to bind certain initiation factors; domain 2 forms a 3-helical bundle and is required for Pol II binding; domain 3 forms a zinc ribbon and is essential for stimulation of RNA cleavage [, ]. Short Name:  TF_IIS-rel
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1 Child Features

DB identifier Type Name
IPR006289 Family Transcription elongation factor, TFIIS

3 Contains

DB identifier Type Name
IPR003617 Domain Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR001222 Domain Zinc finger, TFIIS-type
IPR017890 Domain Transcription elongation factor S-IIM

1 Cross References

Identifier
PIRSF006704

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0006357 IPR016492
GO:0032784 IPR016492

2 Ontology Annotations

GO Term Gene Name
GO:0006357 IPR016492
GO:0032784 IPR016492

0 Parent Features

343 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.TU.contig_27218.2 PAC:16429486 Carica papaya 291  
evm.TU.contig_30173.2 PAC:16429796 Carica papaya 291  
evm.TU.contig_31254.1 PAC:16429959 Carica papaya 291  
evm.TU.contig_34878.1 PAC:16430527 Carica papaya 291  
evm.TU.contig_40325.1 PAC:16431465 Carica papaya 267  
evm.model.supercontig_17.131 PAC:16410624 Carica papaya 291  
evm.model.supercontig_17.136 PAC:16410629 Carica papaya 320  
evm.model.supercontig_17.122 PAC:16410614 Carica papaya 277  
evm.model.supercontig_17.145 PAC:16410639 Carica papaya 291  
29729.m002388 B9S4H1 PAC:16807037 Ricinus communis 330  
orange1.1g020949m A0A067DCZ6 PAC:18110183 Citrus sinensis 319  
orange1.1g020974m A0A067FCU0 PAC:18124495 Citrus sinensis 319  
orange1.1g037763m PAC:18124475 Citrus sinensis 354  
orange1.1g017510m A0A067FDS6 PAC:18106864 Citrus sinensis 370  
orange1.1g017494m A0A067FDS6 PAC:18106863 Citrus sinensis 370  
orange1.1g035641m A0A067DTX2 PAC:18097837 Citrus sinensis 314  
Ciclev10011999m PAC:20798916 Citrus clementina 370  
Ciclev10011998m PAC:20798915 Citrus clementina 370  
Ciclev10013356m PAC:20796296 Citrus clementina 370  
Ciclev10024181m V4VT75 PAC:20811268 Citrus clementina 314  
Potri.016G032300.1 B9IHM3 PAC:27013107 Populus trichocarpa 333  
Potri.016G032800.1 U5FJY3 PAC:27013276 Populus trichocarpa 333  
Potri.006G034400.1 B9H8R3 PAC:27006766 Populus trichocarpa 412  
Gorai.005G003700.1 A0A0D2S8U1 PAC:26804145 Gossypium raimondii 332  
SapurV1A.1916s0030.1.p PAC:31407677 Salix purpurea 329  
SapurV1A.0159s0220.1.p PAC:31410579 Salix purpurea 430  
AUR62002430-RA PAC:36288969 Chenopodium quinoa 376  
AUR62023758-RA PAC:36281800 Chenopodium quinoa 377  
Phvul.009G042900.1.p V7ARX5 PAC:37151358 Phaseolus vulgaris 368  
Phvul.009G042900.2.p V7ARX5 PAC:37151359 Phaseolus vulgaris 368  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            17913884
            17901206
            16648364
            10940308