Gene : Gorai.013G002400 G. raimondii v2.1
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  24
Name:  ? Gorai.013G002400 Secondary Identifier:  ? PAC:26788248
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii CAROTENOID-PWY Gossypium raimondii pathologic  
Graimondii PWY-5943 Gossypium raimondii pathologic  
Graimondii PWY-5947 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.013G002400 0.5kb upstream 0.5kb upstream 2896 true Chr13: 190621-193516 Gossypium raimondii
Gorai.013G002400 0.5kb upstream 0.5kb upstream 500 false Chr13: 193017-193516 Gossypium raimondii
Gorai.013G002400 0.5kb downstream 0.5kb downstream 2896 true Chr13: 190121-193016 Gossypium raimondii
Gorai.013G002400 0.5kb downstream 0.5kb downstream 500 false Chr13: 190121-190620 Gossypium raimondii
Gorai.013G002400 1.0kb upstream 1.0kb upstream 3396 true Chr13: 190621-194016 Gossypium raimondii
Gorai.013G002400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 193017-194016 Gossypium raimondii
Gorai.013G002400 1.0kb downstream 1.0kb downstream 3396 true Chr13: 189621-193016 Gossypium raimondii
Gorai.013G002400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 189621-190620 Gossypium raimondii
Gorai.013G002400 2.0kb upstream 2.0kb upstream 4396 true Chr13: 190621-195016 Gossypium raimondii
Gorai.013G002400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 193017-195016 Gossypium raimondii
Gorai.013G002400 2.0kb downstream 2.0kb downstream 4396 true Chr13: 188621-193016 Gossypium raimondii
Gorai.013G002400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 188621-190620 Gossypium raimondii
Gorai.013G002400 5.0kb upstream 5.0kb upstream 7396 true Chr13: 190621-198016 Gossypium raimondii
Gorai.013G002400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 193017-198016 Gossypium raimondii
Gorai.013G002400 5.0kb downstream 5.0kb downstream 7396 true Chr13: 185621-193016 Gossypium raimondii
Gorai.013G002400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 185621-190620 Gossypium raimondii
Gorai.013G002400 10.0kb upstream 10.0kb upstream 12396 true Chr13: 190621-203016 Gossypium raimondii
Gorai.013G002400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 193017-203016 Gossypium raimondii
Gorai.013G002400 10.0kb downstream 10.0kb downstream 12396 true Chr13: 180621-193016 Gossypium raimondii
Gorai.013G002400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 180621-190620 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832829 5264 Brassicales-Malvales View MSA
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain