Gene : Gorai.001G216200 G. raimondii v2.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  2162
Name:  ? Gorai.001G216200 Secondary Identifier:  ? PAC:26822138
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii CAROTENOID-PWY Gossypium raimondii pathologic  
Graimondii PWY-5943 Gossypium raimondii pathologic  
Graimondii PWY-5947 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.001G216200 0.5kb upstream 0.5kb upstream 8102 true Chr01: 43289061-43297162 Gossypium raimondii
Gorai.001G216200 0.5kb upstream 0.5kb upstream 500 false Chr01: 43296663-43297162 Gossypium raimondii
Gorai.001G216200 0.5kb downstream 0.5kb downstream 8102 true Chr01: 43288561-43296662 Gossypium raimondii
Gorai.001G216200 0.5kb downstream 0.5kb downstream 500 false Chr01: 43288561-43289060 Gossypium raimondii
Gorai.001G216200 1.0kb upstream 1.0kb upstream 8602 true Chr01: 43289061-43297662 Gossypium raimondii
Gorai.001G216200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 43296663-43297662 Gossypium raimondii
Gorai.001G216200 1.0kb downstream 1.0kb downstream 8602 true Chr01: 43288061-43296662 Gossypium raimondii
Gorai.001G216200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 43288061-43289060 Gossypium raimondii
Gorai.001G216200 2.0kb upstream 2.0kb upstream 9602 true Chr01: 43289061-43298662 Gossypium raimondii
Gorai.001G216200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 43296663-43298662 Gossypium raimondii
Gorai.001G216200 2.0kb downstream 2.0kb downstream 9602 true Chr01: 43287061-43296662 Gossypium raimondii
Gorai.001G216200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 43287061-43289060 Gossypium raimondii
Gorai.001G216200 5.0kb upstream 5.0kb upstream 12602 true Chr01: 43289061-43301662 Gossypium raimondii
Gorai.001G216200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 43296663-43301662 Gossypium raimondii
Gorai.001G216200 5.0kb downstream 5.0kb downstream 12602 true Chr01: 43284061-43296662 Gossypium raimondii
Gorai.001G216200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43284061-43289060 Gossypium raimondii
Gorai.001G216200 10.0kb upstream 10.0kb upstream 17602 true Chr01: 43289061-43306662 Gossypium raimondii
Gorai.001G216200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 43296663-43306662 Gossypium raimondii
Gorai.001G216200 10.0kb downstream 10.0kb downstream 17602 true Chr01: 43279061-43296662 Gossypium raimondii
Gorai.001G216200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 43279061-43289060 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829995 5264 Brassicales-Malvales View MSA
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain