Gene : Potri.012G036200 P. trichocarpa v3.0
Defline:  (1 of 3) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  362
Name:  ? Potri.012G036200 Secondary Identifier:  ? PAC:27050670
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5464 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.012G036200 0.5kb upstream 0.5kb upstream 5389 true Chr12: 3237459-3242847 Populus trichocarpa
Potri.012G036200 0.5kb upstream 0.5kb upstream 500 false Chr12: 3237459-3237958 Populus trichocarpa
Potri.012G036200 0.5kb downstream 0.5kb downstream 5389 true Chr12: 3237959-3243347 Populus trichocarpa
Potri.012G036200 0.5kb downstream 0.5kb downstream 500 false Chr12: 3242848-3243347 Populus trichocarpa
Potri.012G036200 1.0kb upstream 1.0kb upstream 5889 true Chr12: 3236959-3242847 Populus trichocarpa
Potri.012G036200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3236959-3237958 Populus trichocarpa
Potri.012G036200 1.0kb downstream 1.0kb downstream 5889 true Chr12: 3237959-3243847 Populus trichocarpa
Potri.012G036200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3242848-3243847 Populus trichocarpa
Potri.012G036200 2.0kb upstream 2.0kb upstream 6889 true Chr12: 3235959-3242847 Populus trichocarpa
Potri.012G036200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3235959-3237958 Populus trichocarpa
Potri.012G036200 2.0kb downstream 2.0kb downstream 6889 true Chr12: 3237959-3244847 Populus trichocarpa
Potri.012G036200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3242848-3244847 Populus trichocarpa
Potri.012G036200 5.0kb upstream 5.0kb upstream 9889 true Chr12: 3232959-3242847 Populus trichocarpa
Potri.012G036200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3232959-3237958 Populus trichocarpa
Potri.012G036200 5.0kb downstream 5.0kb downstream 9889 true Chr12: 3237959-3247847 Populus trichocarpa
Potri.012G036200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3242848-3247847 Populus trichocarpa
Potri.012G036200 10.0kb upstream 10.0kb upstream 14889 true Chr12: 3227959-3242847 Populus trichocarpa
Potri.012G036200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3227959-3237958 Populus trichocarpa
Potri.012G036200 10.0kb downstream 10.0kb downstream 14889 true Chr12: 3237959-3252847 Populus trichocarpa
Potri.012G036200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3242848-3252847 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.751        
cufflinks 3.639       High
cufflinks 1.621        
cufflinks 1.45       Low
cufflinks 1.197       Low
cufflinks 2.383        
cufflinks 1.575        
cufflinks 3.022       High
cufflinks 1.628        
cufflinks 2.974       High
cufflinks 3.035       High
cufflinks 3.304       High
cufflinks 2.271        
cufflinks 2.749        
cufflinks 2.097        
cufflinks 2.205        
cufflinks 2.969       High
cufflinks 1.599        
cufflinks 1.323       Low
cufflinks 2.15        
cufflinks 1.588        
cufflinks 1.906        
cufflinks 1.661        
cufflinks 2.724        
cufflinks 2.186        
cufflinks 5.038        
cufflinks 6.558        
cufflinks 5.155        
cufflinks 7.648        
cufflinks 5.045        

0 Strain