Gene : Potri.008G147200 P. trichocarpa v3.0
Defline:  (1 of 4) K00797 - spermidine synthase (speE, SRM) Genomic Order:  1472
Name:  ? Potri.008G147200 Secondary Identifier:  ? PAC:27038211
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-7528 Populus trichocarpa pathologic  
Ptrichocarpa POLYAMINSYN3-PWY Populus trichocarpa pathologic  
Ptrichocarpa BSUBPOLYAMSYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.008G147200 0.5kb upstream 0.5kb upstream 5366 true Chr08: 9910357-9915722 Populus trichocarpa
Potri.008G147200 0.5kb upstream 0.5kb upstream 500 false Chr08: 9910357-9910856 Populus trichocarpa
Potri.008G147200 0.5kb downstream 0.5kb downstream 5366 true Chr08: 9910857-9916222 Populus trichocarpa
Potri.008G147200 0.5kb downstream 0.5kb downstream 500 false Chr08: 9915723-9916222 Populus trichocarpa
Potri.008G147200 1.0kb upstream 1.0kb upstream 5866 true Chr08: 9909857-9915722 Populus trichocarpa
Potri.008G147200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9909857-9910856 Populus trichocarpa
Potri.008G147200 1.0kb downstream 1.0kb downstream 5866 true Chr08: 9910857-9916722 Populus trichocarpa
Potri.008G147200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9915723-9916722 Populus trichocarpa
Potri.008G147200 2.0kb upstream 2.0kb upstream 6866 true Chr08: 9908857-9915722 Populus trichocarpa
Potri.008G147200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9908857-9910856 Populus trichocarpa
Potri.008G147200 2.0kb downstream 2.0kb downstream 6866 true Chr08: 9910857-9917722 Populus trichocarpa
Potri.008G147200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9915723-9917722 Populus trichocarpa
Potri.008G147200 5.0kb upstream 5.0kb upstream 9866 true Chr08: 9905857-9915722 Populus trichocarpa
Potri.008G147200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9905857-9910856 Populus trichocarpa
Potri.008G147200 5.0kb downstream 5.0kb downstream 9866 true Chr08: 9910857-9920722 Populus trichocarpa
Potri.008G147200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9915723-9920722 Populus trichocarpa
Potri.008G147200 10.0kb upstream 10.0kb upstream 14866 true Chr08: 9900857-9915722 Populus trichocarpa
Potri.008G147200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9900857-9910856 Populus trichocarpa
Potri.008G147200 10.0kb downstream 10.0kb downstream 14866 true Chr08: 9910857-9925722 Populus trichocarpa
Potri.008G147200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9915723-9925722 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.696     High  
cufflinks 18.832     High  
cufflinks 23.769     High  
cufflinks 39.215     High High
cufflinks 16.816     High  
cufflinks 20.735     High  
cufflinks 11.123     High Low
cufflinks 16.431     High  
cufflinks 23.282     High  
cufflinks 25.57     High High
cufflinks 18.978     High  
cufflinks 19.293     High  
cufflinks 17.367     High  
cufflinks 18.943     High  
cufflinks 21.132     High  
cufflinks 16.606     High  
cufflinks 16.193     High  
cufflinks 23.779     High  
cufflinks 11.659     High Low
cufflinks 16.613     High  
cufflinks 19.145     High  
cufflinks 13.425     High Low
cufflinks 22.567     High  
cufflinks 20.813     High  
cufflinks 46.216     High  
cufflinks 46.627     High  
cufflinks 52.053     High  
cufflinks 51.183     High  
cufflinks 59.302     High High
cufflinks 43.98     High  

0 Strain