Gene : Potri.012G002600 P. trichocarpa v3.0
Defline:  (1 of 1) 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  26
Name:  ? Potri.012G002600 Secondary Identifier:  ? PAC:27050496
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa ARGSPECAT-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-7528 Populus trichocarpa pathologic  
Ptrichocarpa POLYAMINSYN3-PWY Populus trichocarpa pathologic  
Ptrichocarpa BSUBPOLYAMSYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.012G002600 0.5kb upstream 0.5kb upstream 6361 true Chr12: 225220-231580 Populus trichocarpa
Potri.012G002600 0.5kb upstream 0.5kb upstream 500 false Chr12: 231081-231580 Populus trichocarpa
Potri.012G002600 0.5kb downstream 0.5kb downstream 6361 true Chr12: 224720-231080 Populus trichocarpa
Potri.012G002600 0.5kb downstream 0.5kb downstream 500 false Chr12: 224720-225219 Populus trichocarpa
Potri.012G002600 1.0kb upstream 1.0kb upstream 6861 true Chr12: 225220-232080 Populus trichocarpa
Potri.012G002600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 231081-232080 Populus trichocarpa
Potri.012G002600 1.0kb downstream 1.0kb downstream 6861 true Chr12: 224220-231080 Populus trichocarpa
Potri.012G002600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 224220-225219 Populus trichocarpa
Potri.012G002600 2.0kb upstream 2.0kb upstream 7861 true Chr12: 225220-233080 Populus trichocarpa
Potri.012G002600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 231081-233080 Populus trichocarpa
Potri.012G002600 2.0kb downstream 2.0kb downstream 7861 true Chr12: 223220-231080 Populus trichocarpa
Potri.012G002600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 223220-225219 Populus trichocarpa
Potri.012G002600 5.0kb upstream 5.0kb upstream 10861 true Chr12: 225220-236080 Populus trichocarpa
Potri.012G002600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 231081-236080 Populus trichocarpa
Potri.012G002600 5.0kb downstream 5.0kb downstream 10861 true Chr12: 220220-231080 Populus trichocarpa
Potri.012G002600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 220220-225219 Populus trichocarpa
Potri.012G002600 10.0kb upstream 10.0kb upstream 15861 true Chr12: 225220-241080 Populus trichocarpa
Potri.012G002600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 231081-241080 Populus trichocarpa
Potri.012G002600 10.0kb downstream 10.0kb downstream 15861 true Chr12: 215220-231080 Populus trichocarpa
Potri.012G002600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 215220-225219 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.318        
cufflinks 0.823        
cufflinks 0.451       Low
cufflinks 0.992        
cufflinks 1.019        
cufflinks 3.26       High
cufflinks 0.425       Low
cufflinks 2.959       High
cufflinks 1.339        
cufflinks 2.982       High
cufflinks 1.589        
cufflinks 1.178        
cufflinks 1.434        
cufflinks 2.688       High
cufflinks 1.76        
cufflinks 0.763        
cufflinks 0.507       Low
cufflinks 2.678       High
cufflinks 1.926        
cufflinks 0.4       Low
cufflinks 0.876        
cufflinks 2.81       High
cufflinks 1.261        
cufflinks 1.497        
cufflinks 25.868        
cufflinks 21.992        
cufflinks 18.883       Low
cufflinks 27.609        
cufflinks 30.925     High High
cufflinks 23.598        

0 Strain