Gene : Potri.002G187000 P. trichocarpa v3.0
Defline:  (1 of 2) 6.1.1.15//6.1.1.17 - Proline--tRNA ligase / Prolyl-tRNA synthetase // Glutamate--tRNA ligase / Glutamyl-tRNA synthetase Genomic Order:  1870
Name:  ? Potri.002G187000 Secondary Identifier:  ? PAC:27020687
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRNA-CHARGING-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-5918 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5188 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.002G187000 0.5kb upstream 0.5kb upstream 5347 true Chr02: 14693857-14699203 Populus trichocarpa
Potri.002G187000 0.5kb upstream 0.5kb upstream 500 false Chr02: 14698704-14699203 Populus trichocarpa
Potri.002G187000 0.5kb downstream 0.5kb downstream 5347 true Chr02: 14693357-14698703 Populus trichocarpa
Potri.002G187000 0.5kb downstream 0.5kb downstream 500 false Chr02: 14693357-14693856 Populus trichocarpa
Potri.002G187000 1.0kb upstream 1.0kb upstream 5847 true Chr02: 14693857-14699703 Populus trichocarpa
Potri.002G187000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 14698704-14699703 Populus trichocarpa
Potri.002G187000 1.0kb downstream 1.0kb downstream 5847 true Chr02: 14692857-14698703 Populus trichocarpa
Potri.002G187000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 14692857-14693856 Populus trichocarpa
Potri.002G187000 2.0kb upstream 2.0kb upstream 6847 true Chr02: 14693857-14700703 Populus trichocarpa
Potri.002G187000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 14698704-14700703 Populus trichocarpa
Potri.002G187000 2.0kb downstream 2.0kb downstream 6847 true Chr02: 14691857-14698703 Populus trichocarpa
Potri.002G187000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 14691857-14693856 Populus trichocarpa
Potri.002G187000 5.0kb upstream 5.0kb upstream 9847 true Chr02: 14693857-14703703 Populus trichocarpa
Potri.002G187000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 14698704-14703703 Populus trichocarpa
Potri.002G187000 5.0kb downstream 5.0kb downstream 9847 true Chr02: 14688857-14698703 Populus trichocarpa
Potri.002G187000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 14688857-14693856 Populus trichocarpa
Potri.002G187000 10.0kb upstream 10.0kb upstream 14847 true Chr02: 14693857-14708703 Populus trichocarpa
Potri.002G187000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 14698704-14708703 Populus trichocarpa
Potri.002G187000 10.0kb downstream 10.0kb downstream 14847 true Chr02: 14683857-14698703 Populus trichocarpa
Potri.002G187000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 14683857-14693856 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.494       High
cufflinks 2.121        
cufflinks 0.928       Low
cufflinks 1.105        
cufflinks 1.658        
cufflinks 3.893       High
cufflinks 1.174        
cufflinks 1.252        
cufflinks 2.125        
cufflinks 3.526       High
cufflinks 1.131        
cufflinks 1.823        
cufflinks 0.669       Low
cufflinks 0.882       Low
cufflinks 1.535        
cufflinks 1.056        
cufflinks 1.866        
cufflinks 1.077        
cufflinks 1.633        
cufflinks 1.901        
cufflinks 2.32        
cufflinks 1.903        
cufflinks 0.819       Low
cufflinks 1.421        
cufflinks 2.228       Low
cufflinks 3.128        
cufflinks 4.31        
cufflinks 2.869        
cufflinks 3.519        
cufflinks 2.851        

0 Strain