GO Term : GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding GO

Namespace:  molecular_function Obsolete:  false
description  Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.

0 Cross References

1 Data Sets

Name URL
InterPro domain GO annotations  

1 Ontology

Name
GO

10158 Ontology Annotations

Class GO Term Gene Name Db
OntologyAnnotation GO:0000981 evm.model.supercontig_17.185 GO
GOAnnotation GO:0000981 evm.TU.supercontig_17.185  
GOAnnotation GO:0000981 evm.TU.supercontig_6.395  
OntologyAnnotation GO:0000981 evm.model.supercontig_6.395 GO
OntologyAnnotation GO:0000981 evm.model.supercontig_96.47 GO
GOAnnotation GO:0000981 evm.TU.supercontig_96.47  
OntologyAnnotation GO:0000981 28859.m000318 GO
GOAnnotation GO:0000981 28859.t000004  
OntologyAnnotation GO:0000981 29794.m003310 GO
GOAnnotation GO:0000981 29794.t000009  
GOAnnotation GO:0000981 29822.t000127  
OntologyAnnotation GO:0000981 29822.m003452 GO
GOAnnotation GO:0000981 30128.t000152  
OntologyAnnotation GO:0000981 30128.m008691 GO
OntologyAnnotation GO:0000981 30147.m014053 GO
GOAnnotation GO:0000981 30147.t000324  
GOAnnotation GO:0000981 Cucsa.158540  
OntologyAnnotation GO:0000981 Cucsa.158540.1 GO
GOAnnotation GO:0000981 Cucsa.250560  
OntologyAnnotation GO:0000981 Cucsa.250560.1 GO
GOAnnotation GO:0000981 Cucsa.309430  
OntologyAnnotation GO:0000981 Cucsa.309430.1 GO
GOAnnotation GO:0000981 Cucsa.395100  
OntologyAnnotation GO:0000981 Cucsa.395100.1 GO
GOAnnotation GO:0000981 orange1.1g048558m.g  
OntologyAnnotation GO:0000981 orange1.1g048558m GO
OntologyAnnotation GO:0000981 orange1.1g036565m GO
GOAnnotation GO:0000981 orange1.1g036565m.g  
GOAnnotation GO:0000981 orange1.1g042591m.g  
OntologyAnnotation GO:0000981 orange1.1g042591m GO

38 Parents

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003700 transcription factor activity, sequence-specific DNA binding Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0010468 regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
GO:0051252 regulation of RNA metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA.
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0008150 biological_process Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO:0003674 molecular_function Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
GO:0065007 biological regulation Any process that modulates a measurable attribute of any biological process, quality or function.
GO:0050794 regulation of cellular process Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0080090 regulation of primary metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GO:0031323 regulation of cellular metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
GO:0019219 regulation of nucleobase-containing compound metabolic process Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0050789 regulation of biological process Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GO:0019222 regulation of metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GO:0051171 regulation of nitrogen compound metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds.
GO:0060255 regulation of macromolecule metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:1901363 heterocyclic compound binding Interacting selectively and non-covalently with heterocyclic compound.
GO:0097159 organic cyclic compound binding Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.
GO:2000112 regulation of cellular macromolecule biosynthetic process Any process that modulates the frequency, rate or extent of cellular macromolecule biosynthetic process.
GO:1903506 regulation of nucleic acid-templated transcription Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription.
GO:0009889 regulation of biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances.
GO:2001141 regulation of RNA biosynthetic process Any process that modulates the frequency, rate or extent of RNA biosynthetic process.
GO:0010556 regulation of macromolecule biosynthetic process Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0031326 regulation of cellular biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.

78 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
has_part GO:0000977 GO:0000981
is_a GO:0003700 GO:0000981
part of GO:0006357 GO:0000981
has_part GO:1990837 GO:0000981
part of GO:0010468 GO:0000981
part of GO:0031323 GO:0000981
part of GO:0051171 GO:0000981
part of GO:0051252 GO:0000981
part of GO:0031326 GO:0000981
part of GO:0050789 GO:0000981
part of GO:0080090 GO:0000981
part of GO:0019219 GO:0000981
has_part GO:0005488 GO:0000981
has_part GO:0001067 GO:0000981
part of GO:0019222 GO:0000981
is_a GO:0003674 GO:0000981
has_part GO:0000976 GO:0000981
part of GO:0009889 GO:0000981
has_part GO:0000975 GO:0000981
is_a GO:0001071 GO:0000981
has_part GO:0043565 GO:0000981
part of GO:0006355 GO:0000981
part of GO:0010556 GO:0000981
has_part GO:0044212 GO:0000981
part of GO:2001141 GO:0000981
has_part GO:1901363 GO:0000981
part of GO:0008150 GO:0000981
part of GO:0050794 GO:0000981
part of GO:2000112 GO:0000981
has_part GO:0003690 GO:0000981

1 Synonyms

Name Type
sequence-specific DNA binding RNA polymerase II transcription factor activity synonym