Gene : Thhalv10007481m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2996
Name:  ? Thhalv10007481m.g Secondary Identifier:  ? PAC:20187893
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-1081 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10007481m.g 0.5kb upstream 0.5kb upstream 2976 true scaffold_5: 15099801-15102776 Eutrema salsugineum
Thhalv10007481m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 15099801-15100300 Eutrema salsugineum
Thhalv10007481m.g 0.5kb downstream 0.5kb downstream 2976 true scaffold_5: 15100301-15103276 Eutrema salsugineum
Thhalv10007481m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 15102777-15103276 Eutrema salsugineum
Thhalv10007481m.g 1.0kb upstream 1.0kb upstream 3476 true scaffold_5: 15099301-15102776 Eutrema salsugineum
Thhalv10007481m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 15099301-15100300 Eutrema salsugineum
Thhalv10007481m.g 1.0kb downstream 1.0kb downstream 3476 true scaffold_5: 15100301-15103776 Eutrema salsugineum
Thhalv10007481m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 15102777-15103776 Eutrema salsugineum
Thhalv10007481m.g 2.0kb upstream 2.0kb upstream 4476 true scaffold_5: 15098301-15102776 Eutrema salsugineum
Thhalv10007481m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 15098301-15100300 Eutrema salsugineum
Thhalv10007481m.g 2.0kb downstream 2.0kb downstream 4476 true scaffold_5: 15100301-15104776 Eutrema salsugineum
Thhalv10007481m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 15102777-15104776 Eutrema salsugineum
Thhalv10007481m.g 5.0kb upstream 5.0kb upstream 7476 true scaffold_5: 15095301-15102776 Eutrema salsugineum
Thhalv10007481m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 15095301-15100300 Eutrema salsugineum
Thhalv10007481m.g 5.0kb downstream 5.0kb downstream 7476 true scaffold_5: 15100301-15107776 Eutrema salsugineum
Thhalv10007481m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 15102777-15107776 Eutrema salsugineum
Thhalv10007481m.g 10.0kb upstream 10.0kb upstream 12476 true scaffold_5: 15090301-15102776 Eutrema salsugineum
Thhalv10007481m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 15090301-15100300 Eutrema salsugineum
Thhalv10007481m.g 10.0kb downstream 10.0kb downstream 12476 true scaffold_5: 15100301-15112776 Eutrema salsugineum
Thhalv10007481m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 15102777-15112776 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain