Gene : Thhalv10020573m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  1414
Name:  ? Thhalv10020573m.g Secondary Identifier:  ? PAC:20182778
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum CAROTENOID-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-5943 Eutrema salsugineum pathologic  
Esalsugineum PWY-5947 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10020573m.g 0.5kb upstream 0.5kb upstream 2633 true scaffold_13: 6247145-6249777 Eutrema salsugineum
Thhalv10020573m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 6247145-6247644 Eutrema salsugineum
Thhalv10020573m.g 0.5kb downstream 0.5kb downstream 2633 true scaffold_13: 6247645-6250277 Eutrema salsugineum
Thhalv10020573m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 6249778-6250277 Eutrema salsugineum
Thhalv10020573m.g 1.0kb upstream 1.0kb upstream 3133 true scaffold_13: 6246645-6249777 Eutrema salsugineum
Thhalv10020573m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 6246645-6247644 Eutrema salsugineum
Thhalv10020573m.g 1.0kb downstream 1.0kb downstream 3133 true scaffold_13: 6247645-6250777 Eutrema salsugineum
Thhalv10020573m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 6249778-6250777 Eutrema salsugineum
Thhalv10020573m.g 2.0kb upstream 2.0kb upstream 4133 true scaffold_13: 6245645-6249777 Eutrema salsugineum
Thhalv10020573m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 6245645-6247644 Eutrema salsugineum
Thhalv10020573m.g 2.0kb downstream 2.0kb downstream 4133 true scaffold_13: 6247645-6251777 Eutrema salsugineum
Thhalv10020573m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 6249778-6251777 Eutrema salsugineum
Thhalv10020573m.g 5.0kb upstream 5.0kb upstream 7133 true scaffold_13: 6242645-6249777 Eutrema salsugineum
Thhalv10020573m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 6242645-6247644 Eutrema salsugineum
Thhalv10020573m.g 5.0kb downstream 5.0kb downstream 7133 true scaffold_13: 6247645-6254777 Eutrema salsugineum
Thhalv10020573m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 6249778-6254777 Eutrema salsugineum
Thhalv10020573m.g 10.0kb upstream 10.0kb upstream 12133 true scaffold_13: 6237645-6249777 Eutrema salsugineum
Thhalv10020573m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 6237645-6247644 Eutrema salsugineum
Thhalv10020573m.g 10.0kb downstream 10.0kb downstream 12133 true scaffold_13: 6247645-6259777 Eutrema salsugineum
Thhalv10020573m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 6249778-6259777 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367824 5261 Brassicaceae View MSA
123832829 5264 Brassicales-Malvales View MSA
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain