Protein Domain : IPR006509

Type:  Family Name:  Splicing factor, RBM39-like
Description:  This entry represents RBM39 (also known as CAPER) proteins from mammals and a group of putative RNA splicing factors including the Pad1 protein from fungi. All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These proteins are closely related to the U2AF splicing factor family (). In mice, CAPER is a transcriptional coactivator of activating protein-1 (AP-1) and estrogen receptors (ERs) []. It may be involved in pre-mRNA splicing process. Short Name:  RBM39_SF
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0 Child Features

2 Contains

DB identifier Type Name
IPR012677 Domain Nucleotide-binding alpha-beta plait domain
IPR000504 Domain RNA recognition motif domain

1 Cross References

Identifier
TIGR01622

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003723 IPR006509
GO:0006397 IPR006509
GO:0005634 IPR006509

3 Ontology Annotations

GO Term Gene Name
GO:0003723 IPR006509
GO:0006397 IPR006509
GO:0005634 IPR006509

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
151471 D8S0D1 PAC:15416963 Selaginella moellendorffii 532  
evm.model.supercontig_20.102 PAC:16412896 Carica papaya 602  
evm.model.supercontig_72.39 PAC:16425539 Carica papaya 592  
30183.m001297 B9RRL9 PAC:16822982 Ricinus communis 609  
Cucsa.101320.6 PAC:16958679 Cucumis sativus 535  
Cucsa.101320.7 PAC:16958680 Cucumis sativus 434  
Cucsa.101320.2 PAC:16958675 Cucumis sativus 599  
Cucsa.101320.3 A0A0A0KFB3 PAC:16958676 Cucumis sativus 598  
Cucsa.101320.4 PAC:16958677 Cucumis sativus 561  
Cucsa.101320.5 PAC:16958678 Cucumis sativus 548  
Cucsa.101320.1 PAC:16958674 Cucumis sativus 600  
Cucsa.370400.2 PAC:16981764 Cucumis sativus 423  
Cucsa.370400.1 PAC:16981763 Cucumis sativus 593  
orange1.1g006398m A0A067FLC5 PAC:18099236 Citrus sinensis 647  
orange1.1g006608m A0A067FQ02 PAC:18099237 Citrus sinensis 639  
orange1.1g006380m PAC:18096179 Citrus sinensis 647  
orange1.1g007742m PAC:18096180 Citrus sinensis 591  
AT5G09880.1 Q93Y25 PAC:19673168 Arabidopsis thaliana 527  
AT2G16940.2 F4ILE1 PAC:19639148 Arabidopsis thaliana 610  
AT2G16940.1 Q9ZVW9 PAC:19639150 Arabidopsis thaliana 561  
AT2G16940.3 F4ILE0 PAC:19639149 Arabidopsis thaliana 599  
Thhalv10022624m V4ME69 PAC:20202324 Eutrema salsugineum 566  
Thhalv10013005m PAC:20205890 Eutrema salsugineum 608  
Ciclev10028006m V4S5W8 PAC:20813295 Citrus clementina 639  
Ciclev10027985m V4SFJ9 PAC:20813294 Citrus clementina 647  
Ciclev10025229m V4SQH4 PAC:20800012 Citrus clementina 589  
Lus10027830 PAC:23156871 Linum usitatissimum 540  
Lus10005059 PAC:23149001 Linum usitatissimum 552  
Lus10025075 PAC:23167845 Linum usitatissimum 597  
Lus10034466 PAC:23176070 Linum usitatissimum 636  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11704680