Protein Domain : IPR011129

Type:  Domain Name:  Cold shock protein
Description:  A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic single-strand nucleic-acid binding proteins [, , , , ]. This domain, which is known as the 'cold-shock domain' (CSD) is present in the proteins listed below.Escherichia coliprotein CS7.4 (gene cspA) which is induced in response to low temperature (cold-shock protein) and which binds to and stimulates the transcription of the CCAAT-containing promoters of the HN-S protein and of gyrA.Transcription termination factor Rho, a prokaryotic protein which facilitates transcription termination.Mammalian Y box binding protein 1 (YB1). A protein that binds to the CCAAT-containing Y box of mammalian HLA class II genes.Xenopus Y box binding proteins -1 and -2 (Y1 and Y2). Proteins that bind to the CCAAT-containing Y box of Xenopus hsp70 genes.Xenopus B box binding protein (YB3). YB3 binds the B box promoter element of genes transcribed by RNA polymerase III.Enhancer factor I subunit A (EFI-A) (dbpB). A protein that also bind to CCAAT-motif in various gene promoters.DbpA, a human DNA-binding protein of unknown specificity.Bacillus subtiliscold-shock proteins cspB and cspC.Streptomyces clavuligerusprotein SC 7.0.E. coli proteins cspB, cspC, cspD, cspE and cspF.Unr, a mammalian gene encoded upstream of the N-ras gene. Unr contains nine repeats that are similar to the CSD domain. The function of Unr is not yet known but it could be a multivalent DNA-binding protein.PPPin, a mammalian brain-specific protein that binds to histone mRNA and which is thought to play a role in the regulation of brain development. Short Name:  Cold_shock_prot

2 Child Features

DB identifier Type Name
IPR002059 Domain Cold-shock protein, DNA-binding
IPR011113 Domain Rho termination factor, RNA-binding

1 Contains

DB identifier Type Name
IPR019844 Conserved_site Cold-shock conserved site

1 Cross References

Identifier
SM00357

5 Found Ins

DB identifier Type Name
IPR012340 Domain Nucleic acid-binding, OB-fold
IPR011804 Family Ribonuclease II
IPR004476 Family Ribonuclease II/ribonuclease R
IPR013223 Domain Ribonuclease B, N-terminal OB domain
IPR011805 Family Ribonuclease R

1 GO Annotation

GO Term Gene Name
GO:0003676 IPR011129

1 Ontology Annotations

GO Term Gene Name
GO:0003676 IPR011129

0 Parent Features

672 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
58801 D8RTW2 PAC:15410167 Selaginella moellendorffii 145  
evm.model.supercontig_6.261 PAC:16423444 Carica papaya 238  
31478.m000031 B9TGF3 PAC:16825052 Ricinus communis 67  
36084.m000029 B9TD12 PAC:16826865 Ricinus communis 435  
28357.m000094 B9T6B7 PAC:16800749 Ricinus communis 257  
29405.m000161 B9T6D3 PAC:16802806 Ricinus communis 266  
27472.m000302 B9T7H4 PAC:16798452 Ricinus communis 67  
orange1.1g047168m A0A067G775 PAC:18098760 Citrus sinensis 258  
AT4G36020.1 O65639 PAC:19645201 Arabidopsis thaliana 299  
AT2G17870.1 Q94C69 PAC:19641292 Arabidopsis thaliana 301  
Thhalv10026001m V4MAV3 PAC:20193679 Eutrema salsugineum 263  
Thhalv10022795m E5CYD5 PAC:20202437 Eutrema salsugineum 295  
Ciclev10027474m V4SNQ5 PAC:20801750 Citrus clementina 264  
Lus10027839 PAC:23156874 Linum usitatissimum 161  
Lus10041902 PAC:23147048 Linum usitatissimum 246  
Lus10025058 PAC:23167822 Linum usitatissimum 86  
Lus10034487 PAC:23176077 Linum usitatissimum 162  
Lus10028449 PAC:23166123 Linum usitatissimum 247  
Potri.005G112800.1 B9MXF4 PAC:27029939 Populus trichocarpa 235  
Potri.007G057100.1 U5G7X6 PAC:27015885 Populus trichocarpa 243  
Gorai.008G062500.1 A0A0D2T1B3 PAC:26818370 Gossypium raimondii 244  
Gorai.007G193700.1 A0A0D2QVU5 PAC:26782636 Gossypium raimondii 253  
49156 I0YJT8 PAC:27387679 Coccomyxa subellipsoidea C-169 949  
45992 I0ZAW6 PAC:27389404 Coccomyxa subellipsoidea C-169 167  
60730 C1MZH2 PAC:27344557 Micromonas pusilla CCMP1545 316  
51491 C1N2D8 PAC:27339436 Micromonas pusilla CCMP1545 994  
70864 C1N2P4 PAC:27339505 Micromonas pusilla CCMP1545 121  
199928 PAC:27343443 Micromonas pusilla CCMP1545 266  
55723 C1DZ42 PAC:27396177 Micromonas sp RCC299 122  
55629 C1DZD2 PAC:27396023 Micromonas sp RCC299 1007  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8022259
            2184368
            1622933
            9586995
            10446180